RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PCDHGB4Q9UN71 923 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 ACTL7BQ9Y614 415 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 ANKRD28O15084 1053 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 ZNF264O43296 627 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 TUBBP07437 444 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 NID1P14543 1247 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 ELK4P28324 431 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 SUMO3P55854 103 aaPredicted RBP18.26■□□□□ 0.51
SHMT1-209ENST00000582653 BEX5Q5H9J7 111 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 Q5PR19 223 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 ANKRD42Q8N9B4 389 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 ABHD3Q8WU67 409 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 CCL19Q99731 98 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 OR10A4Q9H209 315 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 HAO1Q9UJM8 370 aa18.26■□□□□ 0.51
SHMT1-209ENST00000582653 GPC6Q9Y625 555 aaPredicted RBP18.26■□□□□ 0.51
SHMT1-209ENST00000582653 PRSS51A0A1B0GVH4 220 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 SERINC4A6NH21 518 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 DUXAA6NLW8 204 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 FAM171A2A8MVW0 826 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 ESPNB1AK53 854 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 CYP7B1O75881 506 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 NTN1O95631 604 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 C1QCP02747 245 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 PABPC4LP0CB38 370 aaKnown RBP18.25■□□□□ 0.51
SHMT1-209ENST00000582653 OR12D1P0DN82 309 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 UBL4AP11441 157 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 LBPP18428 481 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 AGTR1P30556 359 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 CCR4P51679 360 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 NME5P56597 212 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 BST1Q10588 318 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 QPRTQ15274 297 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 ZNF239Q16600 458 aaKnown RBP18.25■□□□□ 0.51
SHMT1-209ENST00000582653 ARHGAP11BQ3KRB8 267 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 SPANXN4Q5MJ08 99 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 CLEC9AQ6UXN8 241 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 Q71RC1 249 aaPredicted RBP18.25■□□□□ 0.51
SHMT1-209ENST00000582653 STK32CQ86UX6 486 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 OR5W2Q8NH69 310 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 RAB8BQ92930 207 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 TEX37Q96LM6 180 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 THUMPD3Q9BV44 507 aaKnown RBP18.25■□□□□ 0.51
SHMT1-209ENST00000582653 TIGARQ9NQ88 270 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 GPR52Q9Y2T5 361 aa18.25■□□□□ 0.51
SHMT1-209ENST00000582653 EIF4E2O60573 245 aaKnown RBP18.24■□□□□ 0.51
SHMT1-209ENST00000582653 STX11O75558 287 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 UGT2B17O75795 530 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 UQCRC2P22695 453 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 ZNF141Q15928 474 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 PLEKHM3Q6ZWE6 761 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 C16orf62Q7Z3J2 963 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 NUFIP2Q7Z417 695 aaKnown RBP18.24■□□□□ 0.51
SHMT1-209ENST00000582653 TOR1AIP2Q8NFQ8 470 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 RNF128Q8TEB7 428 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 XAGE5Q8WWM1 108 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 CPNE4Q96A23 557 aaPredicted RBP18.24■□□□□ 0.51
SHMT1-209ENST00000582653 TESCQ96BS2 214 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 REXO5Q96IC2 774 aaKnown RBP18.24■□□□□ 0.51
SHMT1-209ENST00000582653 MRGPRX4Q96LA9 322 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 NMUR2Q9GZQ4 415 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 QRSL1Q9H0R6 528 aaKnown RBP18.24■□□□□ 0.51
SHMT1-209ENST00000582653 COQ10BQ9H8M1 238 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 MEAF6Q9HAF1 191 aa18.24■□□□□ 0.51
SHMT1-209ENST00000582653 IGHV3-15A0A0B4J1V0 119 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.23■□□□□ 0.51
SHMT1-209ENST00000582653 A0A1W2PNR3 127 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 SNUPNO95149 360 aaKnown RBP18.23■□□□□ 0.51
SHMT1-209ENST00000582653 ALDOCP09972 364 aaKnown RBP18.23■□□□□ 0.51
SHMT1-209ENST00000582653 PSMB1P20618 241 aaKnown RBP18.23■□□□□ 0.51
SHMT1-209ENST00000582653 ENPP1P22413 925 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 WDR4P57081 412 aaKnown RBP18.23■□□□□ 0.51
SHMT1-209ENST00000582653 SKP2Q13309 424 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 CBFBQ13951 182 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 CASP8Q14790 479 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 MAPK14Q16539 360 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 SLC25A53Q5H9E4 307 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 ANXA8L1Q5VT79 327 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 HHATQ5VTY9 493 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 HEPHL1Q6MZM0 1159 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 TNFAIP8L2Q6P589 184 aaPredicted RBP18.23■□□□□ 0.51
SHMT1-209ENST00000582653 HMGN2P46Q86SG4 172 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 TUSC5Q8IXB3 177 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 MIPOL1Q8TD10 442 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 ZFP90Q8TF47 636 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 IGFBPL1Q8WX77 278 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 BDH2Q9BUT1 245 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 HDHD5Q9BXW7 423 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 ZNF350Q9GZX5 532 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 LAT2Q9GZY6 243 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 EXD2Q9NVH0 621 aa18.23■□□□□ 0.51
SHMT1-209ENST00000582653 GJE1A6NN92 205 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 C9JVG2 144 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 AK1P00568 194 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 CSTAP01040 98 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 HEXAP06865 529 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 UBTFL6P0CB48 400 aaPredicted RBP18.22■□□□□ 0.51
SHMT1-209ENST00000582653 NR1H2P55055 460 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 UFM1P61960 85 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 RNPS1Q15287 305 aaKnown RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms