RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 POTEKPQ9BYX7 375 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 REG4Q9BYZ8 158 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 BCO1Q9HAY6 547 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 GPATCH2Q9NW75 528 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 ING1Q9UK53 422 aaPredicted RBP18.7■□□□□ 0.58
VPS53-216ENST00000574029 MAGED1Q9Y5V3 778 aaPredicted RBP18.7■□□□□ 0.58
VPS53-216ENST00000574029 KCNE3Q9Y6H6 103 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 TMEM114B3SHH9 223 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 RAC3P60763 192 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 BSPH1Q075Z2 132 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 SELENBP1Q13228 472 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 NDUFAF6Q330K2 333 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 ATG4DQ86TL0 474 aaPredicted RBP18.69■□□□□ 0.58
VPS53-216ENST00000574029 DDIASQ8IXT1 998 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 C4orf33Q8N1A6 199 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 MAPK1IP1LQ8NDC0 245 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 ATP6V1C2Q8NEY4 427 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 OR56A1Q8NGH5 318 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 ADAMTS15Q8TE58 950 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 EPS8L3Q8TE67 593 aaKnown RBP18.69■□□□□ 0.58
VPS53-216ENST00000574029 PSD2Q9BQI7 771 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 ROPN1BQ9BZX4 212 aaPredicted RBP18.69■□□□□ 0.58
VPS53-216ENST00000574029 CXorf36Q9H7Y0 433 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 ROPN1Q9HAT0 212 aaPredicted RBP18.69■□□□□ 0.58
VPS53-216ENST00000574029 LIPT1Q9Y234 373 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 DTNAQ9Y4J8 743 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 TRAF6Q9Y4K3 522 aa18.69■□□□□ 0.58
VPS53-216ENST00000574029 DPRXA6NFQ7 191 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 GTPBP1O00178 669 aaKnown RBP18.68■□□□□ 0.58
VPS53-216ENST00000574029 PIP5K1BO14986 540 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 CHRNGP07510 517 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 KRT16P08779 473 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 MAPK1P28482 360 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 CDKN1AP38936 164 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 OR3A2P47893 321 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 TP53BP2Q13625 1128 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 PGGHGQ32M88 737 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 DNM1P46Q6ZS02 220 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 Q6ZT83 130 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 BHLHA15Q7RTS1 189 aaPredicted RBP18.68■□□□□ 0.58
VPS53-216ENST00000574029 RIBC1Q8N443 379 aaPredicted RBP18.68■□□□□ 0.58
VPS53-216ENST00000574029 NATD1Q8N6N6 113 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 KBTBD8Q8NFY9 601 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 GTPBP3Q969Y2 492 aaKnown RBP18.68■□□□□ 0.58
VPS53-216ENST00000574029 PPP3R2Q96LZ3 170 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 TRIM2Q9C040 744 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 SLCO5A1Q9H2Y9 848 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 KLHL9Q9P2J3 617 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 GIMAP2Q9UG22 337 aa18.68■□□□□ 0.58
VPS53-216ENST00000574029 FAF1Q9UNN5 650 aaPredicted RBP18.68■□□□□ 0.58
VPS53-216ENST00000574029 IGHV3-15A0A0B4J1V0 119 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 A0A1W2PP18 115 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 SMIM23A6NLE4 172 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 ETV2O00321 342 aaPredicted RBP18.67■□□□□ 0.58
VPS53-216ENST00000574029 NPHS1O60500 1241 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 ACVR1BP36896 505 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 PTGR1Q14914 329 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 XKR7Q5GH72 579 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 ARL13AQ5H913 290 aaPredicted RBP18.67■□□□□ 0.58
VPS53-216ENST00000574029 OR5W2Q8NH69 310 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 OR2W6PQ8NHA6 318 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 SFXN5Q8TD22 340 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 COQ8BQ96D53 544 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 TMEM109Q9BVC6 243 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 PRSS50Q9UI38 385 aa18.67■□□□□ 0.58
VPS53-216ENST00000574029 A0A1W2PNR3 127 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 ZNF264O43296 627 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 EIF4E2O60573 245 aaKnown RBP18.66■□□□□ 0.58
VPS53-216ENST00000574029 C6orf47O95873 294 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 IGHV4-39P01824 125 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 FESP07332 822 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 SLC7A1P30825 629 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 ALDH3A1P30838 453 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 QPRTQ15274 297 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 LSM12Q3MHD2 195 aaKnown RBP18.66■□□□□ 0.58
VPS53-216ENST00000574029 TOR1AIP2Q8NFQ8 470 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 MOAP1Q96BY2 351 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 OR7D2Q96RA2 312 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 TRAF4Q9BUZ4 470 aaPredicted RBP18.66■□□□□ 0.58
VPS53-216ENST00000574029 GRIP2Q9C0E4 1043 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 ATAD3AQ9NVI7 634 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 MKS1Q9NXB0 559 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 LGALS13Q9UHV8 139 aa18.66■□□□□ 0.58
VPS53-216ENST00000574029 SMAD9O15198 467 aaKnown RBP18.65■□□□□ 0.58
VPS53-216ENST00000574029 CYTIPO60759 359 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 DNAJA2O60884 412 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 PEX11AO75192 247 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 LYPLA1O75608 230 aaPredicted RBP18.65■□□□□ 0.58
VPS53-216ENST00000574029 LYZL6O75951 148 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 UBL4AP11441 157 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 RASGEF1BQ0VAM2 473 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 CBFBQ13951 182 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 SPDYE7PQ495Y7 208 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 ZNF614Q8N883 585 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 RFWD2Q8NHY2 731 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 ZNF75CPQ92670 426 aaPredicted RBP18.65■□□□□ 0.58
VPS53-216ENST00000574029 SDF2Q99470 211 aa18.65■□□□□ 0.58
VPS53-216ENST00000574029 EML4Q9HC35 981 aaKnown RBP18.65■□□□□ 0.58
VPS53-216ENST00000574029 FBN1P35555 2871 aaKnown RBP18.64■□□□□ 0.58
VPS53-216ENST00000574029 TLDC2A0PJX2 215 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms