RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GET4Q7L5D6 327 aaPredicted RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 POGLUT1Q8NBL1 392 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 OR7G2Q8NG99 324 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 BPIFA2Q96DR5 249 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 NT5DC2Q9H857 520 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 C12orf4Q9NQ89 552 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 DIABLOQ9NR28 239 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 U3KQ87 197 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 SCN5AQ14524 2016 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 RCBTB2O95199 551 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 TLX1P31314 330 aaPredicted RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 MTNR1BP49286 362 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 RGS1Q08116 209 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 THSD4Q6ZMP0 1018 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 UBE2Q1Q7Z7E8 422 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 FAM181AQ8N9Y4 354 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 LGALS14Q8TCE9 139 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 EPHX3Q9H6B9 360 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 CYSLTR2Q9NS75 346 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 ASB6Q9NWX5 421 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3DA0A087WVF3 549 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3IA0A087WXS9 549 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 FXYD6-FXYD2A0A087WZ82 144 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3EA0A087X179 549 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3KA0A087X1G2 549 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3FA6NER0 549 aaPredicted RBP13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3LB9A6J9 549 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 C4orf51C9J302 202 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 L7N2F9 121 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3HP0C7X1 549 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 MAKP20794 623 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 CFL1P23528 166 aaKnown RBP13.46□□□□□ -0.25
VPS35-210ENST00000568784 PKLRP30613 574 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 BLVRAP53004 296 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 NOGQ13253 232 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 DUSP5Q16690 384 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TRMT12Q53H54 448 aaKnown RBP13.46□□□□□ -0.25
VPS35-210ENST00000568784 EOGTQ5NDL2 527 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3GQ6DHY5 549 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3CQ6IPX1 549 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 ZNF613Q6PF04 617 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TBC1D3Q8IZP1 549 aaPredicted RBP13.46□□□□□ -0.25
VPS35-210ENST00000568784 GALNT6Q8NCL4 622 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 OR2L5Q8NG80 312 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 OR2A1Q8NGT9 310 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 THAP4Q8WY91 577 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 C1QTNF2Q9BXJ5 285 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 FXYD6Q9H0Q3 95 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 FBXO34Q9NWN3 711 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 FKBP7Q9Y680 259 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 SGK494L7N484 410 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 PAPLNO95428 1278 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 GABRA3P34903 492 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TNK1Q13470 666 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 OR1Q1Q15612 314 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 POMZP3Q6PJE2 187 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 NRROSQ86YC3 692 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 SRFBP1Q8NEF9 429 aaKnown RBP13.46□□□□□ -0.25
VPS35-210ENST00000568784 NXPE2Q96DL1 559 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 DERL3Q96Q80 235 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TNFRSF13CQ96RJ3 184 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 TEAD3Q99594 435 aa13.46□□□□□ -0.25
VPS35-210ENST00000568784 A0A0A6YYD5 115 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 TRAPPC13A5PLN9 417 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 SLC22A31A6NKX4 558 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 RAF1P04049 648 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 GDNFP39905 211 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 GBX2P52951 348 aaPredicted RBP13.46□□□□□ -0.26
VPS35-210ENST00000568784 FOXK2Q01167 660 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 NIPAL3Q6P499 406 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 ZNF836Q6ZNA1 936 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 RASGRP3Q8IV61 690 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 LRRC25Q8N386 305 aaPredicted RBP13.46□□□□□ -0.26
VPS35-210ENST00000568784 TTLQ8NG68 377 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 NARS2Q96I59 477 aaKnown RBP13.46□□□□□ -0.26
VPS35-210ENST00000568784 ZBP1Q9H171 429 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 TTYH1Q9H313 450 aaPredicted RBP13.46□□□□□ -0.26
VPS35-210ENST00000568784 B3GNT2Q9NY97 397 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 IL20Q9NYY1 176 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 IKZF2Q9UKS7 526 aa13.46□□□□□ -0.26
VPS35-210ENST00000568784 MEIS3P1A6NDR6 274 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 TRABD2BA6NFA1 517 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 RGS11O94810 467 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 HSD17B2P37059 387 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 GDI2P50395 445 aaKnown RBP13.45□□□□□ -0.26
VPS35-210ENST00000568784 SLC48A1Q6P1K1 146 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 OR4K14Q8NGD5 310 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 CAPNS2Q96L46 248 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 MTHFD2LQ9H903 347 aaPredicted RBP13.45□□□□□ -0.26
VPS35-210ENST00000568784 BCL2L10Q9HD36 194 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 ASB4Q9Y574 426 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 MAB21L2Q9Y586 359 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 NUBP2Q9Y5Y2 271 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 ANAPC1Q9H1A4 1944 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 CDC123O75794 336 aaPredicted RBP13.45□□□□□ -0.26
VPS35-210ENST00000568784 IFNGP01579 166 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 TFP02787 698 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 SLC35G6P0C7Q6 338 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 TFPIP10646 304 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 RBMS1P29558 406 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms