RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 IFNAR2P48551 515 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 DPYSL3Q14195 570 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 RABGAP1LQ5R372 815 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 PVRIGQ6DKI7 326 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 BAIAP2L2Q6UXY1 529 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 KIAA1328Q86T90 577 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 GPD1LQ8N335 351 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 ARL6IP6Q8N6S5 226 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 SPRYD4Q8WW59 207 aaPredicted RBP3.53□□□□□ -1.84
LINC00560-201ENST00000564593 CFAP53Q96M91 514 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 TTC25Q96NG3 672 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 SIGLEC12Q96PQ1 595 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 ERP44Q9BS26 406 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 DPH7Q9BTV6 452 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 RMND5AQ9H871 391 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 KIF20BQ96Q89 1820 aa3.53□□□□□ -1.84
LINC00560-201ENST00000564593 NKTRP30414 1462 aaKnown RBP3.53□□□□□ -1.84
LINC00560-201ENST00000564593 GLI2P10070 1586 aa3.53□□□□□ -1.85
LINC00560-201ENST00000564593 CLTCQ00610 1675 aaKnown RBP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 RICTORQ6R327 1708 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 KRTAP9-6A8MVA2 160 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 ZSCAN12O43309 604 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 NUDT21O43809 227 aaKnown RBP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 BCAS1O75363 584 aaPredicted RBP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 RPA2P15927 270 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 NT5EP21589 574 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 DHPSP49366 369 aaPredicted RBP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 PLA2G16P53816 162 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 EWSR1Q01844 656 aaKnown RBP eCLIP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 ST3GAL3Q11203 375 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 SELPLGQ14242 412 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 ZNF239Q16600 458 aaKnown RBP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 ACSM5Q6NUN0 579 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 UFSP1Q6NVU6 142 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 APTXQ7Z2E3 356 aaKnown RBP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 SERPINA9Q86WD7 417 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 CD177Q8N6Q3 437 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 DENND6BQ8NEG7 585 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 IPMKQ8NFU5 416 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 TRIM44Q96DX7 344 aaPredicted RBP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 IKZF5Q9H5V7 419 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 SLC7A10Q9NS82 523 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 GNG12Q9UBI6 72 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 TMCC3Q9ULS5 477 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 SAMD4AQ9UPU9 718 aaKnown RBP3.52□□□□□ -1.85
LINC00560-201ENST00000564593 ABCC3O15438 1527 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 REREQ9P2R6 1566 aa3.52□□□□□ -1.85
LINC00560-201ENST00000564593 LATO43561 262 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 SCRG1O75711 98 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 KIAA0754O94854 1291 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 F10P00742 488 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 TBXA2RP21731 343 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 RGS4P49798 205 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 LIM2P55344 173 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 RPL32P62910 135 aaKnown RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 ANKDD1AQ495B1 522 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 SPINK14Q6IE38 97 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 PAMR1Q6UXH9 720 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 Q6ZR54 194 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 CENPQQ7L2Z9 268 aaPredicted RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 GPR65Q8IYL9 337 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 LINC01561Q8N1V8 128 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 LRRC43Q8N309 656 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 CADM2Q8N3J6 435 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 AENQ8WTP8 325 aaKnown RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 ARNTL2Q8WYA1 636 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 OR5B2Q96R09 309 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 ALG12Q9BV10 488 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 DUSP16Q9BY84 665 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 XPO7Q9UIA9 1087 aaKnown RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 WDR45Q9Y484 360 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 KIF16BQ96L93 1317 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 ARHGAP31Q2M1Z3 1444 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 PREX1Q8TCU6 1659 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 DIP2CQ9Y2E4 1556 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 COL2A1P02458 1487 aaPredicted RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 ERVK-7P63135 1459 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 ZFYVE9O95405 1425 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 CD109Q6YHK3 1445 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 POLR3AO14802 1390 aaPredicted RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 CENPJQ9HC77 1338 aaPredicted RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 MAPK8IP3Q9UPT6 1336 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 ERI2A8K979 691 aaKnown RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 H0YCG3 227 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 FCN1O00602 326 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 GMFGO60234 142 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 PGK1P00558 417 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 UGT2B4P06133 528 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 PRG2P13727 222 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 CPN1P15169 458 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 TPSB2P20231 275 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 OTX2P32243 289 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 OTUD4Q01804 1114 aaKnown RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 RIPPLY1Q0D2K3 151 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 TPSAB1Q15661 275 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 NDUFA9Q16795 377 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 UTF1Q5T230 341 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 ACOT1Q86TX2 421 aa3.51□□□□□ -1.85
LINC00560-201ENST00000564593 CTNNBL1Q8WYA6 563 aaPredicted RBP3.51□□□□□ -1.85
LINC00560-201ENST00000564593 RPL3LQ92901 407 aaKnown RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms