RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 OR2Y1Q8NGV0 311 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 OR6N2Q8NGY6 317 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 OR8K3Q8NH51 312 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM239Q8WW34 195 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ANKRD9Q96BM1 317 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 NXPE2Q96DL1 559 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 SGTBQ96EQ0 304 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 METTL2AQ96IZ6 378 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 RADILQ96JH8 1075 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 EPYCQ99645 322 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF559Q9BR84 538 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 OSBPL11Q9BXB4 747 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 NPLQ9BXD5 320 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TGIF2Q9GZN2 237 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 WWTR1Q9GZV5 400 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 EGLN3Q9H6Z9 239 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CALHM2Q9HA72 323 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CPNE5Q9HCH3 593 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 UPB1Q9UBR1 384 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 LRCH1Q9Y2L9 728 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CCL27Q9Y4X3 112 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 SPEGQ15772 3267 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CREBBPQ92793 2442 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CELSR3Q9NYQ7 3312 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CENPVL1A0A0U1RR11 272 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 A0A1W2PPK0 400 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PRAMEF25A6NGN4 478 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CYR61O00622 381 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ANKRD28O15084 1053 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 FMO6PO60774 539 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 FCER2P06734 321 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 SPARCP09486 303 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ANXA8P13928 327 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ETS2P15036 469 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF43P17038 809 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 GPX2P18283 190 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 RPS27P42677 84 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TSFMP43897 325 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PRKXP51817 358 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 EFNA3P52797 238 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TCF15Q12870 199 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 EIF3IQ13347 325 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TRA2AQ13595 282 aaKnown RBP eCLIP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF836Q6ZNA1 936 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 LHFPL3Q86UP9 236 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 GCNT2Q8N0V5 402 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF433Q8N7K0 673 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 OR11G2Q8NGC1 345 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PINK1Q9BXM7 581 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 MUC13Q9H3R2 512 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 MED20Q9H944 212 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PILRAQ9UKJ1 303 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TPRKBQ9Y3C4 175 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 IER3IP1Q9Y5U9 82 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CCDC88CQ9P219 2028 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 LOC101059948A0A1B0GTJ6 334 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TLX3O43711 291 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 WDPCPO95876 746 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CBX7O95931 251 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 AK1P00568 194 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ITGAMP11215 1152 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 RHCEP18577 417 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TRHRP34981 398 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 AQP2P41181 271 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CAMK2DQ13557 499 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PUM1Q14671 1186 aaKnown RBP eCLIP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 SMU1Q2TAY7 513 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PROX2Q3B8N5 592 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 LCN8Q6JVE9 175 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PLBD1Q6P4A8 553 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 SHQ1Q6PI26 577 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PLXDC2Q6UX71 529 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TRILQ7L0X0 811 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TIPARPQ7Z3E1 657 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 MDGA2Q7Z553 956 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 THAP5Q7Z6K1 395 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 GRAMD2AQ8IUY3 354 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 LACC1Q8IV20 430 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 LILRA2Q8N149 483 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZADH2Q8N4Q0 377 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PFN4Q8NHR9 129 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 FGF11Q92914 225 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 UBE2FQ969M7 185 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 C1GALT1C1Q96EU7 318 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZC3HAV1LQ96H79 300 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 HES7Q9BYE0 225 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 AICDAQ9GZX7 198 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 KLK13Q9UKR3 277 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ERGIC3Q9Y282 383 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 MRPS7Q9Y2R9 242 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 GPR55Q9Y2T6 319 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 USF3Q68DE3 2245 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PRR23D1E9PI22 279 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 PRICKLE3O43900 615 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 AKR7A3O95154 331 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PRR23D2P0DMB1 279 aaPredicted RBP5□□□□□ -1.61
VPS13C-209ENST00000560637 MMP11P24347 488 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 PSMA3P25788 255 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 CDH11P55287 796 aa5□□□□□ -1.61
VPS13C-209ENST00000560637 OR1C1Q15619 314 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms