RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MAP2K4P45985 399 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 AP2S1P53680 142 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-229ENST00000557348 BTG2P78543 158 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 SCN1BQ07699 218 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 ASAH1Q13510 395 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 SYT16Q17RD7 645 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF528Q3MIS6 628 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 TMEM201Q5SNT2 666 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 ARHGAP40Q5TG30 622 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 RHBDD2Q6NTF9 364 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 RPL13AP3Q6NVV1 102 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 FIGNL1Q6PIW4 674 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CCDC81Q6ZN84 652 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 RASSF6Q6ZTQ3 369 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 OLIG3Q7RTU3 272 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 SLC43A2Q8N370 569 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF527Q8NB42 609 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 OR14A16Q8NHC5 309 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 OSTF1Q92882 214 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CCNL2Q96S94 520 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-229ENST00000557348 WFDC6Q9BQY6 131 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 TMEM246Q9BRR3 403 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 POLDIP3Q9BY77 421 aaKnown RBP11.69□□□□□ -0.54
SHMT2-229ENST00000557348 TRIM2Q9C040 744 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 SLC7A5P2Q9GIP4 190 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 SLC22A4Q9H015 551 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 TMEM27Q9HBJ8 222 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CAPN10Q9HC96 672 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 ACOXLQ9NUZ1 547 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 SEC14L4Q9UDX3 406 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CBLCQ9ULV8 474 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 ERVK-19Q9WJR5 959 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 OR10H1Q9Y4A9 318 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CHST2Q9Y4C5 530 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CLCA3PQ9Y6N3 262 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 ABCA7Q8IZY2 2146 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 THADAQ6YHU6 1953 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 SCN3AQ9NY46 2000 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 OR6C76A6NM76 312 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 SIGLEC6O43699 453 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 PDGFBP01127 241 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 PTBP1P26599 531 aaKnown RBP eCLIP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 SSTR4P31391 388 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 PPICP45877 212 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 PGDP52209 483 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF136P52737 540 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ATP12AP54707 1039 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 PIGFQ07326 219 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ANGPT1Q15389 498 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 OCLNQ16625 522 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 SLC23A3Q6PIS1 610 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 DGAT2L6Q6ZPD8 337 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 CREB3L2Q70SY1 520 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 GDF7Q7Z4P5 450 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ZER1Q7Z7L7 766 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 CDK20Q8IZL9 346 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 METTL27Q8N6F8 245 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF615Q8N8J6 731 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 C16orf52Q8NHV5 167 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 WDR36Q8NI36 951 aaKnown RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 SLC38A2Q96QD8 506 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 NUDT22Q9BRQ3 303 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 CDCA4Q9BXL8 241 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 TGIF2Q9GZN2 237 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 LRRN3Q9H3W5 708 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 RPRD1BQ9NQG5 326 aaKnown RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 POLE4Q9NR33 117 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 SEMA4GQ9NTN9 838 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF226Q9NYT6 803 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 SLC35A3Q9Y2D2 325 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 GPR55Q9Y2T6 319 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 TMEM184BQ9Y519 407 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 TP53BP1Q12888 1972 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 TCRBV16S1A1N1A0A5B0 115 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 GXYLT2A0PJZ3 443 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 CPED1A4D0V7 1026 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 EFCAB7A8K855 629 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 TPST2O60704 377 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ENDOUP21128 410 aaKnown RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 RBM34P42696 430 aaKnown RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 LSM3P62310 102 aaKnown RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 TNK1Q13470 666 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 TRA2AQ13595 282 aaKnown RBP eCLIP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 FGFBP1Q14512 234 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 IRF3Q14653 427 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ARMC4Q5T2S8 1044 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 MFSD4BQ5TF39 518 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 RNLSQ5VYX0 342 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 SLC27A4Q6P1M0 643 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 GUSBP11Q6P575 273 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 AHSA2Q719I0 299 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 GATAD2AQ86YP4 633 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 TMEM151BQ8IW70 566 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 MAML2Q8IZL2 1156 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-229ENST00000557348 CYP4Z2PQ8N1L4 340 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 STX19Q8N4C7 294 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 FAM26EQ8N5C1 309 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 GDPD1Q8N9F7 314 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 DTWD2Q8NBA8 298 aa11.68□□□□□ -0.54
SHMT2-229ENST00000557348 ZFAND1Q8TCF1 268 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms