RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CD79BP40259 229 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 SLC6A8P48029 635 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 SNTB1Q13884 538 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 QPRTQ15274 297 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 GPR68Q15743 365 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 ZNF239Q16600 458 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 HBMQ6B0K9 141 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 TNFAIP8L2Q6P589 184 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 ZNF474Q6S9Z5 364 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 ZNF614Q8N883 585 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 FBXO27Q8NI29 283 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 RNF128Q8TEB7 428 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 XAGE5Q8WWM1 108 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 OR52B2Q96RD2 323 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 GPATCH1Q9BRR8 931 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 SLC39A3Q9BRY0 314 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 POLDIP3Q9BY77 421 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 TIGARQ9NQ88 270 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 PLSCR4Q9NRQ2 329 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 TMEM45AQ9NWC5 275 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 EMC9Q9Y3B6 208 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 USH1CQ9Y6N9 552 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 HMGB1P1B2RPK0 211 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 RFXANKO14593 260 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 TNFSF11O14788 317 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 UBDO15205 165 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 CXCL13O43927 109 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 KRT75O95678 551 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 H2AFXP16104 143 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 RPS4Y1P22090 263 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 DNAJA1P31689 397 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 CCKARP32238 428 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 CDKN2CP42773 168 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 NME5P56597 212 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 HPCAP84074 193 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 RNPS1Q15287 305 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 TOMM34Q15785 309 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 MAPK14Q16539 360 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 NDUFAF6Q330K2 333 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 TTMPQ5BVD1 217 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 NXNQ6DKJ4 435 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 GTF2IRD2BQ6EKJ0 949 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 C3orf33Q6P1S2 294 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 LRRC74BQ6ZQY2 392 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 GTF2IRD2Q86UP8 949 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 RNF130Q86XS8 419 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 LRRC8CQ8TDW0 803 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 ZFP90Q8TF47 636 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 TMEM234Q8WY98 164 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 OSTF1Q92882 214 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 RAB8BQ92930 207 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 TACO1Q9BSH4 297 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 INPP5KQ9BT40 448 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 SLC38A1Q9H2H9 487 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 RMND5AQ9H871 391 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 COQ10BQ9H8M1 238 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 ACER3Q9NUN7 267 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 NDRG3Q9UGV2 375 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 EDARQ9UNE0 448 aa14.36□□□□□ -0.11
CCDC88C-209ENST00000554872 HIVEP1P15822 2718 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 AGAP5A6NIR3 686 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 SMNDC1O75940 238 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 H6PDO95479 791 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 PGCP20142 388 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 FKBP2P26885 142 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 SHC1P29353 583 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 UGT2B10P36537 528 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 CPOXP36551 454 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 MVDP53602 400 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 CARD18P57730 90 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 ZNF621Q6ZSS3 439 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 HDXQ7Z353 690 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 CDC20BQ86Y33 519 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 MIER2Q8N344 545 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 LINC01560Q8TB33 94 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 SLC25A43Q8WUT9 341 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 ZNF524Q96C55 264 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 CCDC28BQ9BUN5 200 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 PRRG4Q9BZD6 226 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 OR10A4Q9H209 315 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 CXXC4Q9H2H0 198 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 TMEM185BQ9H7F4 350 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 ARGLU1Q9NWB6 273 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 THUMPD1Q9NXG2 353 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 PROCRQ9UNN8 238 aa14.35□□□□□ -0.11
CCDC88C-209ENST00000554872 HEATR5AQ86XA9 2040 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 FAM234BA2RU67 622 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 C9JVG2 144 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 FAAHO00519 579 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 DIAPH2O60879 1101 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 HRGP04196 525 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 AGTR1P30556 359 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 SFTPDP35247 375 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 CASP9P55211 416 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 RAC3P60763 192 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 SIRPAP78324 504 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 KCNJ10P78508 379 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 PLAURQ03405 335 aa14.34□□□□□ -0.11
CCDC88C-209ENST00000554872 CHRNEQ04844 493 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms