RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 LMF1Q96S06 567 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 CCNL2Q96S94 520 aaPredicted RBP24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 UBQLN3Q9H347 655 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 COPS7AQ9UBW8 275 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 EFCAB9A8MZ26 197 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 PATE3B3GLJ2 98 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 UTS2O95399 124 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 RAB36O95755 333 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 ONECUT2O95948 504 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 ZGLP1P0C6A0 271 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 PTNP21246 168 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 RAB40BQ12829 278 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 HLA-DQA1Q5Y7H0 255 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 KIRREL2Q6UWL6 708 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 SLC43A2Q8N370 569 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 STT3BQ8TCJ2 826 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 DNAJA4Q8WW22 397 aaPredicted RBP24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 RFKQ969G6 155 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 OR5M11Q96RB7 305 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 MND1Q9BWT6 205 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 FGF20Q9NP95 211 aaPredicted RBP24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 EXOSC3Q9NQT5 275 aaKnown RBP24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 LSM2Q9Y333 95 aaKnown RBP24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 KPNA4O00629 521 aaPredicted RBP24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 SCDO00767 359 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 HCN1O60741 890 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 SYPP08247 313 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 HBQ1P09105 142 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 BMP7P18075 431 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 TBXA2RP21731 343 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 GPR143P51810 404 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 TRIM61Q5EBN2 209 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 AADACL4Q5VUY2 407 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 C9orf40Q8IXQ3 194 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 SLC34A3Q8N130 599 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 CADM2Q8N3J6 435 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 PROKR2Q8NFJ6 384 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 OR2I1PQ8NGU4 316 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 LGALS12Q96DT0 336 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 MGLLQ99685 303 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 SYNDIG1Q9H7V2 258 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 SIGLEC7Q9Y286 467 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 GPR52Q9Y2T5 361 aa24.2■■□□□ 1.46
CCDC88C-205ENST00000553403 SCRG1O75711 98 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 HPGDP15428 266 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 RGS6P49758 472 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 GAS1P54826 345 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 FXYD6P3P58550 94 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 DAB2P98082 770 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 MED22Q15528 200 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 NKAIN1Q4KMZ8 207 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 C3orf38Q5JPI3 329 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 HSDL2Q6YN16 418 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 SLC29A4Q7RTT9 530 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 NANOGP1Q8N7R0 232 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 ARSGQ96EG1 525 aa24.19■■□□□ 1.46
CCDC88C-205ENST00000553403 M0R3G1 203 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 AIREO43918 545 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 PTP4A3O75365 173 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 RFPL3O75679 317 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 CLPXO76031 633 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 CH25HO95992 272 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 VBP1P61758 197 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 COPZ1P61923 177 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 NDUFAF6Q330K2 333 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 SMARCD3Q6STE5 483 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 BPHLQ86WA6 291 aaPredicted RBP24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 LNX2Q8N448 690 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 RNFT2Q96EX2 444 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 GAL3ST4Q96RP7 486 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 WWTR1Q9GZV5 400 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 FN3KQ9H479 309 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 BHLHE40O14503 412 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 PRKNO60260 465 aaPredicted RBP24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 SAGP10523 405 aaPredicted RBP24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 UBL4AP11441 157 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 GADD45AP24522 165 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 UGT2B10P36537 528 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 MTNR1AP48039 350 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 MLLT10P55197 1068 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 LSM3P62310 102 aaKnown RBP24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 PSPHP78330 225 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 DCDP81605 110 aaKnown RBP24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 PWWP2BQ6NUJ5 590 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 C19orf48Q6RUI8 117 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 SLC38A9Q8NBW4 561 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 C17orf47Q8NEP4 570 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 OR13C2Q8NGS9 318 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 NDNFQ8TB73 568 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 RPL3LQ92901 407 aaKnown RBP24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 HSPBAP1Q96EW2 488 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 GFM1Q96RP9 751 aaKnown RBP24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 CLEC2DQ9UHP7 191 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 ICAM5Q9UMF0 924 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 BAIAP2Q9UQB8 552 aa24.18■■□□□ 1.46
CCDC88C-205ENST00000553403 ADAMTS9Q9P2N4 1935 aa24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 A0A087WUJ7 227 aa24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 TIAF1O95411 115 aa24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 HSMCR30P0CW71 290 aa24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 NCS1P62166 190 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms