RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 ZNF559Q9BR84 538 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 THUMPD3Q9BV44 507 aaKnown RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 MED4Q9NPJ6 270 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 EXOSC3Q9NQT5 275 aaKnown RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 SERINC1Q9NRX5 453 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 GLRX2Q9NS18 164 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 ZNF446Q9NWS9 450 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 PACSIN3Q9UKS6 424 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 PCDHB14Q9Y5E9 798 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 MAST4O15021 2626 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 CACNA1DQ01668 2161 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 CACNA1CQ13936 2221 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 A0A096LPI6 279 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 A0A1W2PNV4 684 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 PRAMEF27A3QJZ7 478 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 AGAP5A6NIR3 686 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 CLIC1O00299 241 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 MSTNO14793 375 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 OIP5O43482 229 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 DBIP07108 87 aaKnown RBP13.78□□□□□ -0.2
SHMT2-204ENST00000553324 IL7RP16871 459 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 PPIBP23284 216 aaKnown RBP13.78□□□□□ -0.2
SHMT2-204ENST00000553324 PCYT1AP49585 367 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 CRISP3P54108 245 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 DLX5P56178 289 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 DSTNP60981 165 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 SORDQ00796 357 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 TLE4Q04727 773 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 FOXF1Q12946 379 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 FADDQ13158 208 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 SELENBP1Q13228 472 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 QPRTQ15274 297 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 AGKQ53H12 422 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 HBMQ6B0K9 141 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 DNAJC14Q6Y2X3 702 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-204ENST00000553324 GCNT2Q8N0V5 402 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 ANKFN1Q8N957 763 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 OSTF1Q92882 214 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 ZNF845Q96IR2 970 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-204ENST00000553324 ADGRG7Q96K78 797 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 PAIP1Q9H074 479 aaKnown RBP13.78□□□□□ -0.2
SHMT2-204ENST00000553324 SLC38A1Q9H2H9 487 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 ARMC7Q9H6L4 198 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 CACYBPQ9HB71 228 aaKnown RBP13.78□□□□□ -0.2
SHMT2-204ENST00000553324 MCCC2Q9HCC0 563 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 NPHS2Q9NP85 383 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 SLC6A13Q9NSD5 602 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 DCTN4Q9UJW0 460 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 ZNF232Q9UNY5 417 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 MED12Q93074 2177 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 PKDREJQ9NTG1 2253 aa13.78□□□□□ -0.2
SHMT2-204ENST00000553324 A0A0G2JND7 137 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 A0A0G2JPF8 293 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 A0A0J9YW62 118 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 A0A1W2PP18 115 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 A8MXE2 369 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 HNRNPCL2B2RXH8 293 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 HNRNPCL3B7ZW38 293 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 TNFSF11O14788 317 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 HNRNPCL1O60812 293 aaKnown RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 TNFSF13O75888 250 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 NTN1O95631 604 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 CHRM4P08173 479 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 TFPTP0C1Z6 253 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 HNRNPCL4P0DMR1 293 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 TROVE2P10155 538 aaKnown RBP eCLIP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 ETFAP13804 333 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 UQCRBP14927 111 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 APOBEC1P41238 236 aaKnown RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 CPA2P48052 419 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 RNF144AP50876 292 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 MVDP53602 400 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 MYBPHQ13203 477 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 RGNQ15493 299 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 TOMM34Q15785 309 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 CTU2Q2VPK5 515 aaKnown RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 NDUFAF6Q330K2 333 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 TMEM176BQ3YBM2 270 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 LRIF1Q5T3J3 769 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 SLC2A7Q6PXP3 512 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 PLXDC2Q6UX71 529 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 OLIG3Q7RTU3 272 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 CNEP1R1Q8N9A8 125 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 FAM71CQ8NEG0 241 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 ZNF563Q8TA94 476 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 TSPEARQ8WU66 669 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 CPNE4Q96A23 557 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 GMPPAQ96IJ6 420 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 NPAS1Q99742 590 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 RBM24Q9BX46 236 aaKnown RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 ACER3Q9NUN7 267 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 CORO2BQ9UQ03 480 aa13.77□□□□□ -0.21
SHMT2-204ENST00000553324 SPIN1Q9Y657 262 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-204ENST00000553324 ARHGAP21Q5T5U3 1957 aa13.76□□□□□ -0.21
SHMT2-204ENST00000553324 ITPR2Q14571 2701 aa13.76□□□□□ -0.21
SHMT2-204ENST00000553324 CENPVL1A0A0U1RR11 272 aa13.76□□□□□ -0.21
SHMT2-204ENST00000553324 TUBAL3A6NHL2 446 aa13.76□□□□□ -0.21
SHMT2-204ENST00000553324 NR5A2O00482 541 aa13.76□□□□□ -0.21
SHMT2-204ENST00000553324 CXCL13O43927 109 aa13.76□□□□□ -0.21
SHMT2-204ENST00000553324 PLGP00747 810 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms