RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ARHGEF33A8MVX0 844 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 HNRNPCL2B2RXH8 293 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 C9orf172C9J069 976 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 GTPBP1O00178 669 aaKnown RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ADAM11O75078 769 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ENTPD6O75354 484 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 STK16O75716 305 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 C1orf105O95561 183 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 LALBAP00709 142 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 CATP04040 527 aaKnown RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 FCER2P06734 321 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 JMJD7P0C870 316 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 DNASE1P24855 282 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ITPKBP27987 946 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 RBMS1P29558 406 aaKnown RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 EIF2S3P41091 472 aaKnown RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 BDKRB1P46663 353 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 EVX1P49640 407 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 AKR1D1P51857 326 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 CDH12P55289 794 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 C2orf80Q0P641 193 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SP140Q13342 867 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 NCF4Q15080 339 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ZXDCQ2QGD7 858 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 FRMPD2BQ6IN97 320 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 RNF165Q6ZSG1 346 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 TRIM46Q7Z4K8 759 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 FAM129CQ86XR2 697 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 PLXDC1Q8IUK5 500 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 BMPERQ8N8U9 685 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 CLRN3Q8NCR9 226 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR52E1Q8NGJ3 308 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR4A15Q8NGL6 344 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR4C15Q8NGM1 316 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR8D4Q8NGM9 314 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR2T4Q8NH00 348 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR52P1PQ8NH57 321 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 USP7Q93009 1102 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 TMEM203Q969S6 136 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SCMH1Q96GD3 660 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ERMAPQ96PL5 475 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 PKP4Q99569 1192 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 NPAS1Q99742 590 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 MAP3K3Q99759 626 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 DPH2Q9BQC3 489 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 DOHHQ9BU89 302 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 HDHD2Q9H0R4 259 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ATG10Q9H0Y0 220 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 GHITMQ9H3K2 345 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SLC25A19Q9HC21 320 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 APMAPQ9HDC9 416 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 HRASLS2Q9NWW9 162 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 NDUFAF4Q9P032 175 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 FOXJ2Q9P0K8 574 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 HCN3Q9P1Z3 774 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 PLAGL1Q9UM63 463 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 COLEC10Q9Y6Z7 277 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 BSNQ9UPA5 3926 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 ZAR1LA6NP61 321 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 EFCAB7A8K855 629 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 TGM6O95932 706 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 POU2F1P14859 743 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 GPX2P18283 190 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 C4BPBP20851 252 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 RPL35P42766 123 aaKnown RBP7.11□□□□□ -1.27
LIMA1-216ENST00000552909 HNMTP50135 292 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 EIF3IQ13347 325 aaKnown RBP7.11□□□□□ -1.27
LIMA1-216ENST00000552909 CAMK2DQ13557 499 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 TRA2AQ13595 282 aaKnown RBP eCLIP7.11□□□□□ -1.27
LIMA1-216ENST00000552909 GPR176Q14439 515 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 TGIF1Q15583 401 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 PLA1AQ53H76 456 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 CDKL4Q5MAI5 379 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 MSANTD1Q6ZTZ1 278 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 GPR155Q7Z3F1 870 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 AGBL5Q8NDL9 886 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 OR9Q2Q8NGE9 314 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 LCN9Q8WX39 176 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 GTPBP3Q969Y2 492 aaKnown RBP7.11□□□□□ -1.27
LIMA1-216ENST00000552909 C1GALT1C1Q96EU7 318 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 TSSK3Q96PN8 268 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 OR2M2Q96R28 347 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 PANX1Q96RD7 426 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 SLC29A3Q9BZD2 475 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF436Q9C0F3 470 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-216ENST00000552909 OR51J1Q9H342 316 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 THSD1Q9NS62 852 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 MED9Q9NWA0 146 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 GSTK1Q9Y2Q3 226 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 B3GALT1Q9Y5Z6 326 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 AP1M2Q9Y6Q5 423 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 CACNA1GO43497 2377 aa7.11□□□□□ -1.27
LIMA1-216ENST00000552909 TRAV6A0A075B6T7 132 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 MAGEB17A8MXT2 336 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 LINC01387J3KSC0 135 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 MANBAO00462 879 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 CASKO14936 926 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 IFNA14P01570 189 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 C1QCP02747 245 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 PRPS2P11908 318 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms