RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 GPR89AB7ZAQ6 455 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3LB9A6J9 549 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 SLC43A1O75387 559 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 PPP1R3DO95685 299 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 C1QBP02746 253 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 CT62P0C5K7 136 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3HP0C7X1 549 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 GPR89BP0CG08 455 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 SAGP10523 405 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 PVRP15151 417 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 BMP7P18075 431 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 C5AR1P21730 350 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 NDUFS1P28331 727 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ERP29P30040 261 aaKnown RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 BTCP35070 178 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 MTNR1BP49286 362 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF85Q03923 595 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 DUSP8Q13202 625 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 CRMP1Q14194 572 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TMEM31Q5JXX7 168 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 DCST2Q5T1A1 773 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 BCL2L15Q5TBC7 163 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 FAM205BPQ63HN1 556 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 HBMQ6B0K9 141 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3GQ6DHY5 549 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 FAM109BQ6ICB4 259 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3CQ6IPX1 549 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 SFXN4Q6P4A7 337 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 KRT74Q7RTS7 529 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 CEACAM19Q7Z692 300 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3Q8IZP1 549 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 OR4D9Q8NGE8 314 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 OR5M3Q8NGP4 307 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 OR5J2Q8NH18 312 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 OR10G6Q8NH81 332 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 BRIX1Q8TDN6 353 aaKnown RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 NR4A3Q92570 626 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TSACCQ96A04 125 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 BPIFA2Q96DR5 249 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 PTCHD1Q96NR3 888 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 CITED4Q96RK1 184 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TEAD3Q99594 435 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 COQ7Q99807 217 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 IRF2BPLQ9H1B7 796 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ABCG5Q9H222 651 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 LYARQ9NX58 379 aaKnown RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 MAT2BQ9NZL9 334 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 DAPP1Q9UN19 280 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 HSPB11Q9Y547 144 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 A0A1W2PRG6 482 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 PRSS38A1L453 326 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 CDHR4A6H8M9 788 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 NOTOA8MTQ0 251 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 PRR23D1E9PI22 279 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 IMPA2O14732 288 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 GNB5O14775 395 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ORC5O43913 435 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 FGF17O60258 216 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 SLC19A2O60779 497 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TSC22D2O75157 780 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 OR2B3O76000 313 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 PRR23D2P0DMB1 279 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 GAAP10253 952 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 CPMP14384 443 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 POLR2CP19387 275 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 SLC6A1P30531 599 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TSFMP43897 325 aaKnown RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ARFIP1P53367 373 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 RPS21P63220 83 aaKnown RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 GALEQ14376 348 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 FCN2Q15485 313 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ENPP7Q6UWV6 458 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 DGAT2L6Q6ZPD8 337 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 RANBP3LQ86VV4 465 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TIGD4Q8IY51 512 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 LNX2Q8N448 690 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF614Q8N883 585 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 OR52L1Q8NGH7 329 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 FLVCR1-AS1Q8TAF5 88 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 PATE1Q8WXA2 126 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 OR1E3Q8WZA6 343 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ORAI1Q96D31 301 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 OR2A5Q96R48 311 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ORAI3Q9BRQ5 295 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 JAM3Q9BX67 310 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF350Q9GZX5 532 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 KCNN2Q9H2S1 579 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 IL21RQ9HBE5 538 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 ADGRL4Q9HBW9 690 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TRIM36Q9NQ86 728 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TRPV5Q9NQA5 729 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 CYSLTR2Q9NS75 346 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 STARD5Q9NSY2 213 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 KLF15Q9UIH9 416 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 SIGLEC7Q9Y286 467 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 LRRN3E7EW58 273 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 NGFRP08138 427 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 CD3GP09693 182 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SBK2P0C263 348 aa6.93□□□□□ -1.3
LIMA1-213ENST00000552720 SLC35G6P0C7Q6 338 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms