RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 KLHL26Q53HC5 615 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 CYB5R2Q6BCY4 276 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 ZCCHC12Q6PEW1 402 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 P2RY8Q86VZ1 359 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 MUC15Q8N387 334 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 ZNF433Q8N7K0 673 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 CCNYL1Q8N7R7 359 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 ZFP28Q8NHY6 868 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 FAM168AQ92567 244 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 CDS1Q92903 461 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 RADILQ96JH8 1075 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 ANKZF1Q9H8Y5 726 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 RRAGDQ9NQL2 400 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 GIN1Q9NXP7 522 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 PTGDR2Q9Y5Y4 395 aa15.7■□□□□ 0.1
CLSTN3-214ENST00000542663 A0A087WUV0 522 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 G3V2L1 256 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 H7C417 338 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 AKAP10O43572 662 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 LMX1BO60663 402 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 HSPA4LO95757 839 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 PYGBP11216 843 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 EFNA1P20827 205 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 SUMO3P55854 103 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 SELENBP1Q13228 472 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 PDE7AQ13946 482 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 RAB35Q15286 201 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 ARL13AQ5H913 290 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 SLC25A53Q5H9E4 307 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 LRIG3Q6UXM1 1119 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 IL17RELQ6ZVW7 336 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 SSX8Q7RTT4 187 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 JADE3Q92613 823 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 PPCDCQ96CD2 204 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 FAM120BQ96EK7 910 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 METTL2AQ96IZ6 378 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 FCRL1Q96LA6 429 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 MRGPRX4Q96LA9 322 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 REEP4Q9H6H4 257 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 DUSP22Q9NRW4 184 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 SIRT3Q9NTG7 399 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 ACSS1Q9NUB1 689 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 EMCNQ9ULC0 261 aa15.69■□□□□ 0.1
CLSTN3-214ENST00000542663 EXOC1LA0A1B0GW35 172 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 SLC35F4A4IF30 521 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 ZNF724A8MTY0 619 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 ESPNB1AK53 854 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 RAD51DO75771 328 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 H6PDO95479 791 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 HMGN2P05204 90 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 SDC1P18827 310 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 SLC7A1P30825 629 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 SLC22A25Q6T423 547 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 TMEM108Q6UXF1 575 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 SYT10Q6XYQ8 523 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 FRMD7Q6ZUT3 714 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 FBXL14Q8N1E6 418 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 OR52N5Q8NH56 324 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 CLHC1Q8NHS4 586 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 PROX1Q92786 737 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 TSSK3Q96PN8 268 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 STACQ99469 402 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 FMO2Q99518 471 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 CCT7Q99832 543 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 PIGUQ9H490 435 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 SH3BP4Q9P0V3 963 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 MGAT4BQ9UQ53 548 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 SLC25A15Q9Y619 301 aa15.68■□□□□ 0.1
CLSTN3-214ENST00000542663 A0A1W2PR80 420 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 NPIPB9F8W1W9 429 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 ETV2O00321 342 aaPredicted RBP15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 LY6HO94772 140 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 SRD5A1P18405 259 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 USF1P22415 310 aaPredicted RBP15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 PTAFRP25105 342 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 CD40P25942 277 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 ZNF83P51522 516 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 CLEC6AQ6EIG7 209 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 GALNT5Q7Z7M9 940 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 OR2T11Q8NH01 316 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 IQCGQ9H095 443 aaKnown RBP15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 TSPYL1Q9H0U9 437 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 C1orf109Q9NX04 203 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 BAIAP2L1Q9UHR4 511 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 POU2F3Q9UKI9 436 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 KCNE3Q9Y6H6 103 aa15.67■□□□□ 0.1
CLSTN3-214ENST00000542663 IGHV3-9P01782 118 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 DHRS4L1P0CG22 281 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 FABP6P51161 128 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 ETF1P62495 437 aaKnown RBP15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 LSM11P83369 360 aaKnown RBP eCLIP15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 LASP1Q14847 261 aaKnown RBP15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 FAM120AOSQ5T036 256 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 DCST2Q5T1A1 773 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 CDC73Q6P1J9 531 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 ZYG11AQ6WRX3 759 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 ZNF100Q8IYN0 542 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 ZNF527Q8NB42 609 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 HOXD1Q9GZZ0 328 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms