RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 CADM2Q8N3J6 435 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 FAM83FQ8NEG4 500 aaPredicted RBP12.46□□□□□ -0.41
CD44-224ENST00000526669 TOR1AIP2Q8NFQ8 470 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 OR6T1Q8NGN1 323 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 OR5W2Q8NH69 310 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 ZNF563Q8TA94 476 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 GPR119Q8TDV5 335 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 LZICQ8WZA0 190 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 RELTQ969Z4 430 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 C1GALT1C1Q96EU7 318 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 RNF145Q96MT1 663 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 SLC6A15Q9H2J7 730 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 MMADHCQ9H3L0 296 aaPredicted RBP12.46□□□□□ -0.41
CD44-224ENST00000526669 PTGES2Q9H7Z7 377 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 EXOSC3Q9NQT5 275 aaKnown RBP12.46□□□□□ -0.41
CD44-224ENST00000526669 TAS2R10Q9NYW0 307 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 B4GALT7Q9UBV7 327 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 BAG5Q9UL15 447 aa12.46□□□□□ -0.41
CD44-224ENST00000526669 SAMD4AQ9UPU9 718 aaKnown RBP12.46□□□□□ -0.41
CD44-224ENST00000526669 ESPL1Q14674 2120 aa12.46□□□□□ -0.42
CD44-224ENST00000526669 DOCK7Q96N67 2140 aa12.46□□□□□ -0.42
CD44-224ENST00000526669 CFAP73A6NFT4 308 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 FAM47E-STBD1D6RA91 191 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 NPIPA5E9PKD4 350 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 SYT5O00445 386 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 ZNHIT1O43257 154 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 CBR3O75828 277 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 WISP1O95388 367 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 PRB1P04280 392 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 LINGO3P0C6S8 592 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 PGCP20142 388 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 MST1P26927 711 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 HTR2AP28223 471 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 SRD5A2P31213 254 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 ACAA2P42765 397 aaKnown RBP12.45□□□□□ -0.42
CD44-224ENST00000526669 IDH2P48735 452 aaKnown RBP12.45□□□□□ -0.42
CD44-224ENST00000526669 ZNF41P51814 821 aaPredicted RBP12.45□□□□□ -0.42
CD44-224ENST00000526669 ZNF136P52737 540 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 DSCR4P56555 118 aaPredicted RBP12.45□□□□□ -0.42
CD44-224ENST00000526669 FOXF1Q12946 379 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 FOXD4Q12950 439 aaPredicted RBP12.45□□□□□ -0.42
CD44-224ENST00000526669 QPRTQ15274 297 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 INAQ16352 499 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 PLPPR5Q32ZL2 321 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 C1orf146Q5VVC0 180 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 MYO7BQ6PIF6 2116 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 POMZP3Q6PJE2 187 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 ZNF771Q7L3S4 317 aaPredicted RBP12.45□□□□□ -0.42
CD44-224ENST00000526669 ZNF550Q7Z398 422 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 ZNF440Q8IYI8 595 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 EID3Q8N140 333 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 FAM109AQ8N4B1 249 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 OR14L1PQ8NHC6 308 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 SLC47A1Q96FL8 570 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 SEPHS2Q99611 448 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 MCHR1Q99705 422 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 TRIM15Q9C019 465 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 UBQLN3Q9H347 655 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 OLAHQ9NV23 265 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 MED17Q9NVC6 651 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 RALYQ9UKM9 306 aaKnown RBP12.45□□□□□ -0.42
CD44-224ENST00000526669 NPIPA1Q9UND3 350 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 SLC9A8Q9Y2E8 581 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 SLC6A5Q9Y345 797 aa12.45□□□□□ -0.42
CD44-224ENST00000526669 PHF3Q92576 2039 aaKnown RBP12.45□□□□□ -0.42
CD44-224ENST00000526669 PCNX1Q96RV3 2341 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 CPSF4LA6NMK7 179 aaKnown RBP12.44□□□□□ -0.42
CD44-224ENST00000526669 TTLL8A6PVC2 850 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 hCG_2039718K7EN88 272 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 TPST2O60704 377 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 C8BP07358 591 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 GP1BBP13224 206 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 YAP1P46937 504 aaKnown RBP12.44□□□□□ -0.42
CD44-224ENST00000526669 SLC6A8P48029 635 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 MLLT10P55197 1068 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 SUMO3P55854 103 aaPredicted RBP12.44□□□□□ -0.42
CD44-224ENST00000526669 ELOAQ14241 798 aaKnown RBP12.44□□□□□ -0.42
CD44-224ENST00000526669 ZSWIM7Q19AV6 140 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 HYAL4Q2M3T9 481 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 CMPK2Q5EBM0 449 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 MTX3Q5HYI7 312 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 RAET1LQ5VY80 246 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 OR52E4Q8NGH9 312 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 GEMIN6Q8WXD5 167 aaKnown RBP12.44□□□□□ -0.42
CD44-224ENST00000526669 SNRNP40Q96DI7 357 aaKnown RBP12.44□□□□□ -0.42
CD44-224ENST00000526669 PYURFQ96I23 114 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 RAB3IPQ96QF0 476 aaPredicted RBP12.44□□□□□ -0.42
CD44-224ENST00000526669 AMBRA1Q9C0C7 1298 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 OR2B2Q9GZK3 357 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 EXO5Q9H790 373 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 ASF1BQ9NVP2 202 aa12.44□□□□□ -0.42
CD44-224ENST00000526669 J3KTA2 159 aa12.43□□□□□ -0.42
CD44-224ENST00000526669 ZIC3O60481 467 aa12.43□□□□□ -0.42
CD44-224ENST00000526669 DIRAS1O95057 198 aa12.43□□□□□ -0.42
CD44-224ENST00000526669 CRYABP02511 175 aaKnown RBP12.43□□□□□ -0.42
CD44-224ENST00000526669 MT-ND1P03886 318 aa12.43□□□□□ -0.42
CD44-224ENST00000526669 PTNP21246 168 aa12.43□□□□□ -0.42
CD44-224ENST00000526669 SESN3P58005 492 aa12.43□□□□□ -0.42
CD44-224ENST00000526669 HSF1Q00613 529 aa12.43□□□□□ -0.42
CD44-224ENST00000526669 CCNIQ14094 377 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms