RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MEAF6Q9HAF1 191 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 ADGRL4Q9HBW9 690 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 EXOSC3Q9NQT5 275 aaKnown RBP3.31□□□□□ -1.88
CD44-223ENST00000526553 GNG12Q9UBI6 72 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 CTNNA3Q9UI47 895 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 ANAPC7Q9UJX3 599 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 NTNG1Q9Y2I2 539 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 MAP3K4Q9Y6R4 1608 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 GLI2P10070 1586 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 TEX14Q8IWB6 1497 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 FAM74A7A6NL05 159 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 AP3B1O00203 1094 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 STX7O15400 261 aaKnown RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 LCMT2O60294 686 aaKnown RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 B3GAT3O94766 335 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 IGF1P05019 195 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 CAPN1P07384 714 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 WNT2P09544 360 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 LAMP1P11279 417 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 PVRP15151 417 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 XRCC1P18887 633 aaPredicted RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 UQCRC2P22695 453 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 ATP5A1P25705 553 aaKnown RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 PBLDP30039 288 aaPredicted RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 GRIA1P42261 906 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 SSR1P43307 286 aaKnown RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 GNPDA1P46926 289 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 AIF1P55008 147 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 ATP5IP56385 69 aaPredicted RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 MAP2K1Q02750 393 aaPredicted RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 PLOD1Q02809 727 aaPredicted RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 ZNF33BQ06732 778 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 SLC10A1Q14973 349 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 KIAA0040Q15053 153 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 CHI3L2Q15782 390 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 KRTAP13-3Q3SY46 172 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 FAM74A3Q4VXF1 159 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 BOLA3Q53S33 107 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 MS4A13Q5J8X5 152 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 LGSNQ5TDP6 509 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 MEDAGQ5VYS4 303 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 FAM71F2Q6NXP2 309 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 C16orf62Q7Z3J2 963 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 ACOT1Q86TX2 421 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 UBQLNLQ8IYU4 475 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 LRRC75A-AS1Q8N1F1 130 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 LRRC43Q8N309 656 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 GPR137CQ8N3F9 429 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 BPIFB2Q8N4F0 458 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 STXBP6Q8NFX7 210 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 AENQ8WTP8 325 aaKnown RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 FAM3CQ92520 227 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 FAF2Q96CS3 445 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 SH3YL1Q96HL8 342 aaPredicted RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 TPD52L3Q96J77 140 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 TGM7Q96PF1 710 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 TMEM43Q9BTV4 400 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 RHOJQ9H4E5 214 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 ELOVL2Q9NXB9 296 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 UTP6Q9NYH9 597 aaKnown RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 EHFQ9NZC4 300 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 PRODH2Q9UF12 536 aa3.3□□□□□ -1.88
CD44-223ENST00000526553 COL16A1Q07092 1604 aaPredicted RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 ZCCHC11Q5TAX3 1644 aaKnown RBP3.3□□□□□ -1.88
CD44-223ENST00000526553 ABCC2Q92887 1545 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 CFAP65Q6ZU64 1925 aaKnown RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 TRAV26-1A0A087WT03 109 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 A0A0U1RQS6 177 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 CDX4O14627 284 aaPredicted RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 ZNF208O43345 1280 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 B4GALT2O60909 372 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 N4BP1O75113 896 aaKnown RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 DUSP14O95147 198 aaKnown RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 IL1BP01584 269 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 P0C879 139 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 HSMCR30P0CW71 290 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 ZBTB25P24278 435 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 PRKAR2BP31323 418 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 MAGEA5P43359 124 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 DHPSP49366 369 aaPredicted RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 ARHGDIBP52566 201 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 RND3P61587 244 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 RPL23AP62750 156 aaKnown RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 TNFRSF17Q02223 184 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 RGS1Q08116 209 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 FGL1Q08830 312 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 CYP51A1Q16850 503 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 CCDC183Q5T5S1 534 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 OR8G2PQ6IF36 304 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 FAHD2BQ6P2I3 314 aaPredicted RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 NLRP9Q7RTR0 991 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 TAS2R42Q7RTR8 314 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 APTXQ7Z2E3 356 aaKnown RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 MOB3BQ86TA1 216 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 C15orf54Q8N8G6 183 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 TRPV1Q8NER1 839 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 RFESDQ8TAC1 157 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 TFB1MQ8WVM0 346 aaKnown RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 C18orf25Q96B23 403 aaPredicted RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 FAHD2AQ96GK7 314 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms