RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	TAMM41	Q96BW9	452 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	RSPO3	Q9BXY4	272 aa	Predicted RBP	18.79	■□□□□ 0.6
CD44-222	ENST00000526025	ACER3	Q9NUN7	267 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	RLIM	Q9NVW2	624 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	KLHL28	Q9NXS3	571 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	VDAC3	Q9Y277	283 aa		18.79	■□□□□ 0.6
CD44-222	ENST00000526025	OR2M5	A3KFT3	312 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	CYP7B1	O75881	506 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	STS	P08842	583 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	ABO	P16442	354 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	PRKCA	P17252	672 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	BMP7	P18075	431 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	PSMA4	P25789	261 aa	Known RBP	18.78	■□□□□ 0.6
CD44-222	ENST00000526025	KDELR2	P33947	212 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	KCNJ5	P48544	419 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	CRYBA2	P53672	197 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	BNIP1	Q12981	228 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	QPRT	Q15274	297 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	RAET1L	Q5VY80	246 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	PM20D2	Q8IYS1	436 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	ABTB1	Q969K4	478 aa	Predicted RBP	18.78	■□□□□ 0.6
CD44-222	ENST00000526025	CDRT15	Q96T59	188 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	KLHDC3	Q9BQ90	382 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	UGT2B28	Q9BY64	529 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	PRDM14	Q9GZV8	571 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	TAS2R1	Q9NYW7	299 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	STOML1	Q9UBI4	398 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	SLC13A4	Q9UKG4	626 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	PRPF19	Q9UMS4	504 aa	Known RBP	18.78	■□□□□ 0.6
CD44-222	ENST00000526025	SLC6A5	Q9Y345	797 aa		18.78	■□□□□ 0.6
CD44-222	ENST00000526025	CXCR6	O00574	342 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	PRRG2	O14669	202 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	GMFG	O60234	142 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	ADAM11	O75078	769 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	ATP5H	O75947	161 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	LGI1	O95970	557 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	CPN1	P15169	458 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	GGT1	P19440	569 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	CD247	P20963	164 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	ACAA2	P42765	397 aa	Known RBP	18.77	■□□□□ 0.6
CD44-222	ENST00000526025	MRPL49	Q13405	166 aa	Known RBP	18.77	■□□□□ 0.6
CD44-222	ENST00000526025	RINL	Q6ZS11	566 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	POC1B	Q8TC44	478 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	SLC26A7	Q8TE54	656 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	RNF145	Q96MT1	663 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	TIMP4	Q99727	224 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	BAG5	Q9UL15	447 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	RPH3A	Q9Y2J0	694 aa	Predicted RBP	18.77	■□□□□ 0.6
CD44-222	ENST00000526025	AP4B1	Q9Y6B7	739 aa		18.77	■□□□□ 0.6
CD44-222	ENST00000526025	PHF3	Q92576	2039 aa	Known RBP	18.76	■□□□□ 0.59
CD44-222	ENST00000526025		J3QKU1	62 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	GSTA4	O15217	222 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	TPST1	O60507	370 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	EPPIN	O95925	133 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	HOXD4	P09016	255 aa	Predicted RBP	18.76	■□□□□ 0.59
CD44-222	ENST00000526025	PEPD	P12955	493 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	GNLY	P22749	145 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	PTGER4	P35408	488 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	HTR3A	P46098	478 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	CASP6	P55212	293 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	SESN3	P58005	492 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	CBX1	P83916	185 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	FOXF1	Q12946	379 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	TOMM34	Q15785	309 aa	Predicted RBP	18.76	■□□□□ 0.59
CD44-222	ENST00000526025	DUSP7	Q16829	419 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	DNAL1	Q4LDG9	190 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	WLS	Q5T9L3	541 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	GRINA	Q7Z429	371 aa		18.76	■□□□□ 0.59
CD44-222	ENST00000526025	GMPR2	Q9P2T1	348 aa	Known RBP	18.76	■□□□□ 0.59
CD44-222	ENST00000526025	UBR5	O95071	2799 aa	Predicted RBP	18.76	■□□□□ 0.59
CD44-222	ENST00000526025	ARHGAP21	Q5T5U3	1957 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	NPIPA2	E9PIF3	369 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	NPIPA3	F8WFD2	350 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	WDR1	O75083	606 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	ZNF708	P17019	499 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	SLC1A3	P43003	542 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	CA7	P43166	264 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	LHX2	P50458	406 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	RASSF2	P50749	326 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	MAP2K6	P52564	334 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	SF3B4	Q15427	424 aa	Known RBP eCLIP	18.75	■□□□□ 0.59
CD44-222	ENST00000526025	NRF1	Q16656	503 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	EID3	Q8N140	333 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	SMYD1	Q8NB12	490 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	GPR32P1	Q8NGA4	272 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	ZNF563	Q8TA94	476 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	ARHGDIG	Q99819	225 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	GORASP2	Q9H8Y8	452 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	TES	Q9UGI8	421 aa	Known RBP	18.75	■□□□□ 0.59
CD44-222	ENST00000526025	MAGEL2	Q9UJ55	1249 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	ACAD8	Q9UKU7	415 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	ZNF337	Q9Y3M9	751 aa		18.75	■□□□□ 0.59
CD44-222	ENST00000526025	FIGNL2	A6NMB9	653 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	AP3D1	O14617	1153 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	FMO6P	O60774	539 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	GMNN	O75496	209 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	OPN1SW	P03999	348 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	FES	P07332	822 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	GKN3P	P0CG01	181 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	GP1BB	P13224	206 aa		18.74	■□□□□ 0.59

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