RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	C19orf24	Q9BVV8	132 aa		13.91	□□□□□ -0.18
LMNA-223	ENST00000515459	HOXD1	Q9GZZ0	328 aa		13.91	□□□□□ -0.18
LMNA-223	ENST00000515459	MANSC1	Q9H8J5	431 aa		13.91	□□□□□ -0.18
LMNA-223	ENST00000515459	DUSP22	Q9NRW4	184 aa		13.91	□□□□□ -0.18
LMNA-223	ENST00000515459	ACSS1	Q9NUB1	689 aa	Predicted RBP	13.91	□□□□□ -0.18
LMNA-223	ENST00000515459	SH3BP4	Q9P0V3	963 aa		13.91	□□□□□ -0.18
LMNA-223	ENST00000515459	POU2F3	Q9UKI9	436 aa		13.91	□□□□□ -0.18
LMNA-223	ENST00000515459	CARD8	Q9Y2G2	431 aa		13.91	□□□□□ -0.18
LMNA-223	ENST00000515459	CCL27	Q9Y4X3	112 aa		13.91	□□□□□ -0.18
LMNA-223	ENST00000515459		A0A1W2PNR3	127 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	OR5H1	A6NKK0	313 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459		C9JVG2	144 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459		H3BNH8	94 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	OIP5	O43482	229 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	AKAP10	O43572	662 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	CYTIP	O60759	359 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	EDNRA	P25101	427 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	PTAFR	P25105	342 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	ETF1	P62495	437 aa	Known RBP	13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	KLHL26	Q53HC5	615 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	SLC22A25	Q6T423	547 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	ZNF100	Q8IYN0	542 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	FBXL14	Q8N1E6	418 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	GPR119	Q8TDV5	335 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	IFT81	Q8WYA0	676 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	CDS1	Q92903	461 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	ZNF775	Q96BV0	537 aa	Predicted RBP	13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	ZNF300	Q96RE9	604 aa	Predicted RBP	13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	CCT7	Q99832	543 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	PIGU	Q9H490	435 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	C1orf109	Q9NX04	203 aa		13.9	□□□□□ -0.18
LMNA-223	ENST00000515459	PLCE1	Q9P212	2302 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	ZNF724	A8MTY0	619 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	NPIPB8	E9PQR5	432 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459		H7C417	338 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	GTPBP1	O00178	669 aa	Known RBP	13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	SMAD9	O15198	467 aa	Known RBP	13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	LMX1B	O60663	402 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	HMGN2	P05204	90 aa	Known RBP	13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	DHRS4L1	P0CG22	281 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	IGHV4-31	P0DP07	118 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	UROS	P10746	265 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	ZNF16	P17020	682 aa	Predicted RBP	13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	GCA	P28676	217 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	RNF144A	P50876	292 aa	Predicted RBP	13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	PDE7A	Q13946	482 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	SLC25A53	Q5H9E4	307 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	KLHL17	Q6TDP4	642 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	GALNT5	Q7Z7M9	940 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	ZNF433	Q8N7K0	673 aa	Predicted RBP	13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	ACMSD	Q8TDX5	336 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	PROX1	Q92786	737 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	FAM120B	Q96EK7	910 aa	Known RBP	13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	TSSK3	Q96PN8	268 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	ZCCHC3	Q9NUD5	404 aa	Known RBP	13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	GIN1	Q9NXP7	522 aa		13.89	□□□□□ -0.19
LMNA-223	ENST00000515459	NPIPA5	A0A0B4J1W7	369 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	NPIPA7	E9PJI5	369 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459		G3V2L1	256 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	SLC28A1	O00337	649 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	RAD51D	O75771	328 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	CSF3	P09919	207 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	NPIPA8	P0DM63	369 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	MYL2	P10916	166 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	SRD5A1	P18405	259 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	SDC1	P18827	310 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	FABP6	P51161	128 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	LSM11	P83369	360 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	SPOCK1	Q08629	439 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	LASP1	Q14847	261 aa	Known RBP	13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	CFAP157	Q5JU67	520 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	C3orf33	Q6P1S2	294 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	ZYG11A	Q6WRX3	759 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	FRMD7	Q6ZUT3	714 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	DEPDC4	Q8N2C3	294 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	ARIH2OS	Q8N7S6	290 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	OR52N5	Q8NH56	324 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	CLHC1	Q8NHS4	586 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	RFWD2	Q8NHY2	731 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	C10orf105	Q8TEF2	133 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	ZNF75CP	Q92670	426 aa	Predicted RBP	13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	ARL8A	Q96BM9	186 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	OR5B2	Q96R09	309 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	ANKZF1	Q9H8Y5	726 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	TNFRSF12A	Q9NP84	129 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	DCDC2	Q9UHG0	476 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	PTGDR2	Q9Y5Y4	395 aa		13.88	□□□□□ -0.19
LMNA-223	ENST00000515459	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	13.87	□□□□□ -0.19	1e-7	■■■■□ 21.8
LMNA-223	ENST00000515459	CIB4	A0PJX0	185 aa		13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	ABHD2	P08910	425 aa		13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	BMP4	P12644	408 aa		13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	EFNA1	P20827	205 aa	Predicted RBP	13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	USF1	P22415	310 aa	Predicted RBP	13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	CD40	P25942	277 aa		13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	ECHS1	P30084	290 aa		13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	ZNF83	P51522	516 aa		13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	ATP12A	P54707	1039 aa		13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	CHRNE	Q04844	493 aa		13.87	□□□□□ -0.19
LMNA-223	ENST00000515459	CBFB	Q13951	182 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms