RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SLC25A53Q5H9E4 307 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 ZNF311Q5JNZ3 666 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 RPS26P11Q5JNZ5 115 aaPredicted RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 MRPL2Q5T653 305 aaKnown RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 INTS11Q5TA45 600 aaKnown RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 ERICH5Q6P6B1 374 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 RPTNQ6XPR3 784 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 B3GNT6Q6ZMB0 384 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 PTOV1Q86YD1 416 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 MEIOBQ8N635 442 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 SSC4DQ8WTU2 575 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 SLC35B4Q969S0 331 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 DMRTA2Q96SC8 542 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 GPATCH1Q9BRR8 931 aaKnown RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 CALHM2Q9HA72 323 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 ZNF443Q9Y2A4 671 aaPredicted RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 ZNF337Q9Y3M9 751 aa12.9□□□□□ -0.34
NUP54-216ENST00000514901 SPTAN1Q13813 2472 aaKnown RBP12.9□□□□□ -0.34
NUP54-216ENST00000514901 DOPEY1Q5JWR5 2465 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 CFAP73A6NFT4 308 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 CLDN24A6NM45 220 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 FAAHO00519 579 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 EPPINO95925 133 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 LDLRP01130 860 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 PRKCAP17252 672 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 ME2P23368 584 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 ELK4P28324 431 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 PRKAR1BP31321 381 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 PCGF2P35227 344 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 STARP49675 285 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 MNAT1P51948 309 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 CLDN18P56856 261 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 PCBP3P57721 371 aaKnown RBP12.89□□□□□ -0.35
NUP54-216ENST00000514901 RAC1P63000 192 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 EEF1A1P68104 462 aaKnown RBP12.89□□□□□ -0.35
NUP54-216ENST00000514901 KRT72Q14CN4 511 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 QPRTQ15274 297 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 RABL3Q5HYI8 236 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 C1orf185Q5T7R7 199 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 CHMP1BQ7LBR1 199 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 ZNF550Q7Z398 422 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 HMGN2P46Q86SG4 172 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 PATL1Q86TB9 770 aaKnown RBP12.89□□□□□ -0.35
NUP54-216ENST00000514901 CALHM3Q86XJ0 350 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 VRK2Q86Y07 508 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 ZZZ3Q8IYH5 903 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 OR5M1Q8NGP8 315 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 CNOT9Q92600 299 aaKnown RBP12.89□□□□□ -0.35
NUP54-216ENST00000514901 REXO5Q96IC2 774 aaKnown RBP12.89□□□□□ -0.35
NUP54-216ENST00000514901 TRIM8Q9BZR9 551 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 EVA1AQ9H8M9 152 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 ACER3Q9NUN7 267 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 DNAJB12Q9NXW2 375 aaKnown RBP12.89□□□□□ -0.35
NUP54-216ENST00000514901 TAGLN3Q9UI15 199 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 PHF3Q92576 2039 aaKnown RBP12.89□□□□□ -0.35
NUP54-216ENST00000514901 BAHCC1Q9P281 2608 aa12.89□□□□□ -0.35
NUP54-216ENST00000514901 GJE1A6NN92 205 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 H0Y3Z8 333 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 NTN1O95631 604 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 GP1BBP13224 206 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 AGAP20933 346 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 PSMA4P25789 261 aaKnown RBP12.88□□□□□ -0.35
NUP54-216ENST00000514901 FKBP2P26885 142 aaKnown RBP12.88□□□□□ -0.35
NUP54-216ENST00000514901 HTR3AP46098 478 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 NUDT2P50583 147 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 DLX5P56178 289 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 SESN3P58005 492 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 RPS3AP61247 264 aaKnown RBP12.88□□□□□ -0.35
NUP54-216ENST00000514901 SRYQ05066 204 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 VEZF1Q14119 521 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 TOMM34Q15785 309 aaPredicted RBP12.88□□□□□ -0.35
NUP54-216ENST00000514901 VMACQ2NL98 169 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 DCST1Q5T197 706 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 DHRS4L2Q6PKH6 230 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 C3P1Q6ZMU1 363 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 ZNF836Q6ZNA1 936 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 FBXO27Q8NI29 283 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 ZNF563Q8TA94 476 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 POC1BQ8TC44 478 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 BCAS4Q8TDM0 211 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 RND1Q92730 232 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 CCDC120Q96HB5 630 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 RNF145Q96MT1 663 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 ZNF583Q96ND8 569 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 UCN2Q96RP3 112 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 TTYH2Q9BSA4 534 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 SERINC1Q9NRX5 453 aa12.88□□□□□ -0.35
NUP54-216ENST00000514901 PAQR5Q9NXK6 330 aaPredicted RBP12.88□□□□□ -0.35
NUP54-216ENST00000514901 DOPEY2Q9Y3R5 2298 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 CD8B2A6NJW9 211 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 FAM220BPB1ANY3 271 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 H3BML4 177 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 BCAS1O75363 584 aaPredicted RBP12.87□□□□□ -0.35
NUP54-216ENST00000514901 GLI4P10075 376 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 RYKP34925 604 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 APOBEC1P41238 236 aaKnown RBP12.87□□□□□ -0.35
NUP54-216ENST00000514901 COPZ1P61923 177 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 PMPCAQ10713 525 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 EPS8Q12929 822 aa12.87□□□□□ -0.35
NUP54-216ENST00000514901 FOXF1Q12946 379 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms