RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 GPR87Q9BY21 358 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 NMUR2Q9GZQ4 415 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 DCDC2Q9UHG0 476 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 NUFIP1Q9UHK0 495 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 MID2Q9UJV3 735 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PCTPQ9UKL6 214 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ABCA2Q9BZC7 2435 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OR7A17O14581 309 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 HS6ST1O60243 411 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OTCP00480 354 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PIK3R1P27986 724 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 GABRA4P48169 554 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 XKP51811 444 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 Q0VFX4 171 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 EPS8Q12929 822 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 MPP2Q14168 576 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 GBX1Q14549 363 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 RPS6KA2Q15349 733 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PDSS1Q5T2R2 415 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PCSK4Q6UW60 755 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OLIG3Q7RTU3 272 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 MDGA2Q7Z553 956 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 DMRTC2Q8IXT2 367 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PQLC1Q8N2U9 271 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 NAXEQ8NCW5 288 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ABHD11Q8NFV4 315 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OR2L5Q8NG80 312 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 THRSPQ92748 146 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 RGMAQ96B86 450 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF347Q96SE7 839 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 MND1Q9BWT6 205 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 AICDAQ9GZX7 198 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 RAB33BQ9H082 229 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PIGUQ9H490 435 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 SPACA1Q9HBV2 294 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 RANGRFQ9HD47 186 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 C14orf105Q9NVL8 296 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 GMPR2Q9P2T1 348 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF223Q9UK11 482 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 GABRR3A8MPY1 467 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 C17orf51A8MQB3 221 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 SOX15O60248 233 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 BCAS1O75363 584 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 CPSF4O95639 269 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 CAPNS1P04632 268 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PRR35P0CG20 571 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 UMPSP11172 480 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ANXA8P13928 327 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF10P21506 573 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 CD82P27701 267 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 BUD31P41223 144 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 CDC34P49427 236 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 RIDAP52758 137 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 LIM2P55344 173 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 SRYQ05066 204 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PRTGQ2VWP7 1150 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ANXA8L1Q5VT79 327 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OR4C11Q6IEV9 310 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ABHD17CQ6PCB6 329 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF517Q6ZMY9 492 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 KCTD8Q6ZWB6 473 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 COMMD6Q7Z4G1 85 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 VN1R5Q7Z5H4 357 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF227Q86WZ6 799 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 UBQLNLQ8IYU4 475 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OFCC1Q8IZS5 231 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 TMEM102Q8N9M5 508 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OR10Q1Q8NGQ4 319 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 GPR78Q96P69 363 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 KCNC2Q96PR1 638 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 BTBD9Q96Q07 612 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 SUCNR1Q9BXA5 334 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 HDHD5Q9BXW7 423 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 RBM38Q9H0Z9 239 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PPIL3Q9H2H8 161 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 MMP27Q9H306 513 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 MKKSQ9NPJ1 570 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 GSN-AS1Q9NRJ2 163 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 CMTM6Q9NX76 183 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 LRFN1Q9P244 771 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OSGIN2Q9Y236 505 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OR10H1Q9Y4A9 318 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF451Q9Y4E5 1061 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 TNPO3Q9Y5L0 923 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ALG5Q9Y673 324 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 COPG1Q9Y678 874 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF879B4DU55 563 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 PLIN3O60664 434 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 IL3P08700 152 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 COX7A2P14406 83 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 HIST1H1TP22492 207 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 ATP5A1P25705 553 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 PIGAP37287 484 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 OMPP47874 163 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 SQSTM1Q13501 440 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 INPP5JQ15735 1006 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 TMEM236Q5W0B7 351 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 PRMT9Q6P2P2 845 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 DGAT2L6Q6ZPD8 337 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 RNF44Q7L0R7 432 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms