RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 COMTD1Q86VU5 262 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 GRAMD2AQ8IUY3 354 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 ULK2Q8IYT8 1036 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 GHDCQ8N2G8 530 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 CADM2Q8N3J6 435 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 OR5M1Q8NGP8 315 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 GPR119Q8TDV5 335 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 LRGUKQ96M69 825 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 RNF145Q96MT1 663 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 GPR137Q96N19 417 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 OR2B2Q9GZK3 357 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 RPS6KB2Q9UBS0 482 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 SLC9A8Q9Y2E8 581 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 SLC6A5Q9Y345 797 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 SH3GLB1Q9Y371 365 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 CHST2Q9Y4C5 530 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 MED12Q93074 2177 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 SYT5O00445 386 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 C1QL1O75973 258 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 WISP2O76076 250 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 EPPINO95925 133 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 LGI1O95970 557 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 COPZ1P61923 177 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 FOXK1P85037 733 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 ELOAQ14241 798 aaKnown RBP13.57□□□□□ -0.24
NUP54-213ENST00000513352 TRIM25Q14258 630 aaKnown RBP13.57□□□□□ -0.24
NUP54-213ENST00000513352 PLPPR5Q32ZL2 321 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 ZNF324BQ6AW86 544 aaPredicted RBP13.57□□□□□ -0.24
NUP54-213ENST00000513352 GFRALQ6UXV0 394 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 CBLL1Q75N03 491 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 TRILQ7L0X0 811 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 RANBP3LQ86VV4 465 aaPredicted RBP13.57□□□□□ -0.24
NUP54-213ENST00000513352 CARM1Q86X55 608 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 DHFR2Q86XF0 187 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 NEIL3Q8TAT5 605 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 RNF217Q8TC41 542 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 TMEM234Q8WY98 164 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 SMPDL3BQ92485 455 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 HSH2DQ96JZ2 352 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 PIGQQ9BRB3 760 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 RSPO3Q9BXY4 272 aaPredicted RBP13.57□□□□□ -0.24
NUP54-213ENST00000513352 TRIM15Q9C019 465 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 MUC13Q9H3R2 512 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 ACTR3BQ9P1U1 418 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 SAMD4AQ9UPU9 718 aaKnown RBP13.57□□□□□ -0.24
NUP54-213ENST00000513352 ZGRF1Q86YA3 2104 aa13.57□□□□□ -0.24
NUP54-213ENST00000513352 PRRC2CQ9Y520 2896 aaKnown RBP13.57□□□□□ -0.24
NUP54-213ENST00000513352 SHANK1Q9Y566 2161 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 A0A1B0GTH9 108 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 H3BML4 177 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ZIC3O60481 467 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 HCN1O60741 890 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ADAM11O75078 769 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 C8BP07358 591 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ATP6V1B2P21281 511 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 OR1E2P47887 323 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 TDGF1P3P51864 188 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 SESN3P58005 492 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 SELENOWP63302 87 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 TLE1Q04724 770 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 MERTKQ12866 999 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 NRF1Q16656 503 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ZSCAN26Q16670 478 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 IFI44LQ53G44 452 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 KRTCAP3Q53RY4 240 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 AAGABQ6PD74 315 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 DEF8Q6ZN54 512 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 VTCN1Q7Z7D3 282 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 EID3Q8N140 333 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 OR52E4Q8NGH9 312 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ZBTB8AQ96BR9 441 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ASB9Q96DX5 294 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ARHGDIGQ99819 225 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 SLX1AQ9BQ83 275 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ZNF559Q9BR84 538 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 GORASP2Q9H8Y8 452 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 ACKR4Q9NPB9 350 aa13.56□□□□□ -0.24
NUP54-213ENST00000513352 TESQ9UGI8 421 aaKnown RBP13.56□□□□□ -0.24
NUP54-213ENST00000513352 OR2M5A3KFT3 312 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ZNHIT1O43257 154 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 SUSD5O60279 629 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 CIB2O75838 187 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 IGHG3P01860 377 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ABOP16442 354 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 PRKCAP17252 672 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 POU3F2P20265 443 aaPredicted RBP13.55□□□□□ -0.24
NUP54-213ENST00000513352 EIF1P41567 113 aaKnown RBP13.55□□□□□ -0.24
NUP54-213ENST00000513352 ACAA2P42765 397 aaKnown RBP13.55□□□□□ -0.24
NUP54-213ENST00000513352 MS4A2Q01362 244 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 RBPJQ06330 500 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 FLOT2Q14254 428 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 FXNQ16595 210 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ARHGAP11AQ6P4F7 1023 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ENPP6Q6UWR7 440 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 PLEKHM3Q6ZWE6 761 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ASRGL1Q7L266 308 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 LACC1Q8IV20 430 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ATP6V1C2Q8NEY4 427 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 OR6T1Q8NGN1 323 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 GEMIN6Q8WXD5 167 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms