RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 MTERF4Q7Z6M4 381 aaKnown RBP12.3□□□□□ -0.44
VARS-227ENST00000489979 RELL1Q8IUW5 271 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 ZNF100Q8IYN0 542 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 ZNF433Q8N7K0 673 aaPredicted RBP12.3□□□□□ -0.44
VARS-227ENST00000489979 ZFP28Q8NHY6 868 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 GPR119Q8TDV5 335 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 JADE3Q92613 823 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 ZNF75CPQ92670 426 aaPredicted RBP12.3□□□□□ -0.44
VARS-227ENST00000489979 IQCGQ9H095 443 aaKnown RBP12.3□□□□□ -0.44
VARS-227ENST00000489979 GSTO2Q9H4Y5 243 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 GIN1Q9NXP7 522 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 ICAM5Q9UMF0 924 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 CARD8Q9Y2G2 431 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 ACTL7BQ9Y614 415 aa12.3□□□□□ -0.44
VARS-227ENST00000489979 ARFGEF3Q5TH69 2177 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 LOC100289279A0A1B0GTE1 492 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 A0A1W2PR80 420 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 ZNF724A8MTY0 619 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 SMAD9O15198 467 aaKnown RBP12.29□□□□□ -0.44
VARS-227ENST00000489979 AKAP10O43572 662 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 RAD51DO75771 328 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 RSL1D1O76021 490 aaKnown RBP12.29□□□□□ -0.44
VARS-227ENST00000489979 LY6HO94772 140 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 HSPA4LO95757 839 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 PRKCAP17252 672 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 PTAFRP25105 342 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 EFNA4P52798 201 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 SUMO3P55854 103 aaPredicted RBP12.29□□□□□ -0.44
VARS-227ENST00000489979 POU6F2P78424 691 aaPredicted RBP12.29□□□□□ -0.44
VARS-227ENST00000489979 SELENBP1Q13228 472 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 NDUFAF6Q330K2 333 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 EXOSC6Q5RKV6 272 aaKnown RBP12.29□□□□□ -0.44
VARS-227ENST00000489979 ZCCHC12Q6PEW1 402 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 KLHL17Q6TDP4 642 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 GALNT5Q7Z7M9 940 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 CCNYL1Q8N7R7 359 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 ZNF524Q96C55 264 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 CHMP6Q96FZ7 201 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 MRGPRX4Q96LA9 322 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 BTBD2Q9BX70 525 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 SH3BP4Q9P0V3 963 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 SLC25A15Q9Y619 301 aa12.29□□□□□ -0.44
VARS-227ENST00000489979 CIB4A0PJX0 185 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 M0R1B8 84 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 GTPBP1O00178 669 aaKnown RBP12.28□□□□□ -0.44
VARS-227ENST00000489979 SEC22BO75396 215 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 IGHV3-9P01782 118 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 EFNA1P20827 205 aaPredicted RBP12.28□□□□□ -0.44
VARS-227ENST00000489979 FRKP42685 505 aaPredicted RBP12.28□□□□□ -0.44
VARS-227ENST00000489979 RUNX1T1Q06455 604 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 GGTLC2Q14390 218 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 KIAA0040Q15053 153 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 KLHL26Q53HC5 615 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 LIPNQ5VXI9 398 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 ZNF544Q6NX49 715 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 TIFABQ6ZNK6 161 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 DEPDC4Q8N2C3 294 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 ZNF527Q8NB42 609 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 RFWD2Q8NHY2 731 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 CDS1Q92903 461 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 PPCDCQ96CD2 204 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 MSI2Q96DH6 328 aaKnown RBP12.28□□□□□ -0.44
VARS-227ENST00000489979 ZNF764Q96H86 408 aaPredicted RBP12.28□□□□□ -0.44
VARS-227ENST00000489979 OR5B2Q96R09 309 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 INPP5KQ9BT40 448 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 REEP4Q9H6H4 257 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 RRAGDQ9NQL2 400 aaPredicted RBP12.28□□□□□ -0.44
VARS-227ENST00000489979 PYCARDQ9ULZ3 195 aa12.28□□□□□ -0.44
VARS-227ENST00000489979 NUP214P35658 2090 aaPredicted RBP12.27□□□□□ -0.45
VARS-227ENST00000489979 CCT8L1PA6NM43 557 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 NPIPB8E9PQR5 432 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 H3BNH8 94 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 WIPF1O43516 503 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 CRCPO75575 148 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 H6PDO95479 791 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 PGRP06401 933 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 HNF1AP20823 631 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 ATP6V1C1P21283 382 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 LASP1Q14847 261 aaKnown RBP12.27□□□□□ -0.45
VARS-227ENST00000489979 SLC25A53Q5H9E4 307 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.27□□□□□ -0.45
VARS-227ENST00000489979 FBXW9Q5XUX1 488 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 C8orf74Q6P047 294 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 UBE2J2Q8N2K1 259 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 FAM120BQ96EK7 910 aaKnown RBP12.27□□□□□ -0.45
VARS-227ENST00000489979 TSSK3Q96PN8 268 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 STACQ99469 402 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 PRR14Q9BWN1 585 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 C1QTNF6Q9BXI9 259 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 HOXD1Q9GZZ0 328 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 ANKZF1Q9H8Y5 726 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 EML4Q9HC35 981 aaKnown RBP12.27□□□□□ -0.45
VARS-227ENST00000489979 TNFRSF12AQ9NP84 129 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 DUSP22Q9NRW4 184 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 ACSS1Q9NUB1 689 aaPredicted RBP12.27□□□□□ -0.45
VARS-227ENST00000489979 CCL27Q9Y4X3 112 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 ATP23Q9Y6H3 246 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 PMF1-BGLAPU3KQ54 211 aa12.27□□□□□ -0.45
VARS-227ENST00000489979 VWC2LB2RUY7 222 aa12.26□□□□□ -0.45
VARS-227ENST00000489979 KIAA0513O60268 411 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms