RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 MTHFSDQ2M296 383 aaKnown RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 ZNF829Q3KNS6 432 aaPredicted RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 SLC25A52Q3SY17 297 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 ZNF585BQ52M93 769 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 WDR38Q5JTN6 314 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 SLC22A10Q63ZE4 541 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 TMEM220Q6QAJ8 160 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 ENPP6Q6UWR7 440 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 RBMS3Q6XE24 437 aaKnown RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 SCARA5Q6ZMJ2 495 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 C9orf139Q6ZV77 190 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 HPS6Q86YV9 775 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 LACC1Q8IV20 430 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 STPG4Q8N801 248 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 OR4K14Q8NGD5 310 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 OR10G8Q8NGN5 311 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 ZNF596Q8TC21 504 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 MAPK15Q8TD08 544 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 MAGEE2Q8TD90 523 aaPredicted RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 PCNPQ8WW12 178 aaKnown RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 TM9SF4Q92544 642 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 PCSK5Q92824 1860 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 TMIGD2Q96BF3 282 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 CXorf40BQ96DE9 158 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 CERS2Q96G23 380 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 TGS1Q96RS0 853 aaKnown RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 KRTAP4-7Q9BYR0 210 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 ANKRD60Q9BZ19 345 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 ILKAPQ9H0C8 392 aaPredicted RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 RNF41Q9H4P4 317 aaPredicted RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 C8orf33Q9H7E9 229 aaPredicted RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 ATP13A3Q9H7F0 1226 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 NMRAL1Q9HBL8 299 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 POPDC2Q9HBU9 364 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 STK36Q9NRP7 1315 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 CHMP5Q9NZZ3 219 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 ANGPTL2Q9UKU9 493 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 AK6Q9Y3D8 172 aaKnown RBP3.57□□□□□ -1.84
VPS13D-207ENST00000476169 RHBDD3Q9Y3P4 386 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 WDR7Q9Y4E6 1490 aa3.57□□□□□ -1.84
VPS13D-207ENST00000476169 GREB1LQ9C091 1923 aaPredicted RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 CDK13Q14004 1512 aaKnown RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 CLIP1P30622 1438 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 CD109Q6YHK3 1445 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 A0A1W2PPV4 95 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 A0A1W2PR80 420 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 ERICH2A1L162 156 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 FRG2CA6NGY1 282 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 GABRR3A8MPY1 467 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 C12orf71A8MTZ7 269 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 HSBP1L1C9JCN9 74 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 PSMD11O00231 422 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 FCN1O00602 326 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 ACOT8O14734 319 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 EIF3HO15372 352 aaKnown RBP eCLIP3.56□□□□□ -1.843e-7■■■■■ 34.1
VPS13D-207ENST00000476169 CLOCKO15516 846 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 RS1O15537 224 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 PSTPIP1O43586 416 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 MAGEC1O60732 1142 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 RAMP3O60896 148 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 AP2A1O95782 977 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 GNA14O95837 355 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 CRYAAP02489 173 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 APOA1P02647 267 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 GAPDHP04406 335 aaKnown RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 P04436 131 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 PLEKP08567 350 aaPredicted RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 OR9G9P0C7N8 305 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 BCKDHAP12694 445 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 CCNB1P14635 433 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 MARK3P27448 753 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 RRM2P31350 389 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 YWHABP31946 246 aaKnown RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 FCGR2CP31995 323 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 OTX1P32242 354 aaPredicted RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 RPL4P36578 427 aaKnown RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 DCTP40126 519 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 RFX3P48380 749 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 PAX9P55771 341 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 RPS6P62753 249 aaKnown RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 CSNK2BP67870 215 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 XIAPP98170 497 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 CDK16Q00536 496 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 GUCY2DQ02846 1103 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 FAM189A2Q15884 450 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 SLC5A12Q1EHB4 618 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 GLYR1Q49A26 553 aaPredicted RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 VPS26BQ4G0F5 336 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 ERICH5Q6P6B1 374 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 ZNF790Q6PG37 636 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 LRRC31Q6UY01 552 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 GDPD4Q6W3E5 623 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 ADAMTSL5Q6ZMM2 481 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 LRRC74BQ6ZQY2 392 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 PTAR1Q7Z6K3 402 aaPredicted RBP3.56□□□□□ -1.84
VPS13D-207ENST00000476169 HOGA1Q86XE5 327 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 LINC01561Q8N1V8 128 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 FBXL16Q8N461 479 aa3.56□□□□□ -1.84
VPS13D-207ENST00000476169 ASCC1Q8N9N2 400 aaKnown RBP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms