RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FRMPD4Q14CM0 1322 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 LOC100131303A0A0U1RQF7 123 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 DHRS7CA6NNS2 312 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 TCP11X1B4DZS4 312 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 TRIM49D1C9J1S8 452 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 OR7A17O14581 309 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 MAGEB4O15481 346 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 KIAA0754O94854 1291 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ADCY5O95622 1261 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 PGK1P00558 417 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 UGT2B4P06133 528 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 P0C879 139 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF853P0CG23 659 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 CCDC166P0CW27 439 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 HNF1AP20823 631 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ZP3P21754 424 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ADORA2BP29275 332 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 OTX2P32243 289 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 HPCAL1P37235 193 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 PPT1P50897 306 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 CBX1P83916 185 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 OTUD4Q01804 1114 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 CSTF1Q05048 431 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 RAB40BQ12829 278 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 MXD4Q14582 209 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 SBK1Q52WX2 424 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF658Q5TYW1 1059 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 OR5M10Q6IEU7 315 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 FAM71F2Q6NXP2 309 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 CXCL17Q6UXB2 119 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ACOT1Q86TX2 421 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 FBXO16Q8IX29 292 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 SLC38A6Q8IZM9 456 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ARL6IP6Q8N6S5 226 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 OR2A12Q8NGT7 310 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 SETD7Q8WTS6 366 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 CTNNBL1Q8WYA6 563 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 FAF2Q96CS3 445 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 SLC25A38Q96DW6 304 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 TRIM44Q96DX7 344 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 CELF6Q96J87 481 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 SENP8Q96LD8 212 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 AMDHD1Q96NU7 426 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 RIT2Q99578 217 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 OMDQ99983 421 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 C19orf24Q9BVV8 132 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 CRNKL1Q9BZJ0 848 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 GLIPR2Q9H4G4 154 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF702PQ9H963 129 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 APOBEC3BQ9UH17 382 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 KLHL21Q9UJP4 597 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF221Q9UK13 617 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 TMCC3Q9ULS5 477 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 CA5BQ9Y2D0 317 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 FLVCR1Q9Y5Y0 555 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 ALG6Q9Y672 507 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 KIF16BQ96L93 1317 aa2.07□□□□□ -2.08
CCDC88A-212ENST00000474059 IGHV2-70DA0A0C4DH43 119 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 A0A1W2PNV4 684 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 MBLAC1A4D2B0 266 aaPredicted RBP2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 PP2D1A8MPX8 630 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF705EA8MWA4 302 aaPredicted RBP2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 B4DXG7 233 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 H0YCG3 227 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 WWP2O00308 870 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 BTN3A3O00478 584 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 MSH4O15457 936 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 MAGEB3O15480 346 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 GMFGO60234 142 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 STSP08842 583 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 CALB2P22676 271 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 UGT1A3P35503 534 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 P2RY4P51582 365 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 EFNA3P52797 238 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 AP3M2P53677 418 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 BCL2L1Q07817 233 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 CUL1Q13616 776 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 CCDC152Q4G0S7 254 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 OR2B11Q5JQS5 317 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 PAGE2BQ5JRK9 111 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 ATAD3BQ5T9A4 648 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 FAM199XQ6PEV8 388 aaPredicted RBP2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 KCNIP4Q6PIL6 250 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 TRPM8Q7Z2W7 1104 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 C16orf62Q7Z3J2 963 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 C17orf82Q86X59 251 aaPredicted RBP2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 UBQLNLQ8IYU4 475 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 CLDN19Q8N6F1 224 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 KIR3DL3Q8N743 410 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 ANKFN1Q8N957 763 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 STXBP6Q8NFX7 210 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 OR51G2Q8NGK0 314 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 OR5L2Q8NGL0 311 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 SH3YL1Q96HL8 342 aaPredicted RBP2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 TXN2Q99757 166 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 ZSCAN5AQ9BUG6 496 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 CHIAQ9BZP6 476 aa2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 POLR1EQ9GZS1 481 aaKnown RBP2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 NXF5Q9H1B4 397 aaKnown RBP2.06□□□□□ -2.08
CCDC88A-212ENST00000474059 Q9H3A6 140 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms