RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CLCA1A8K7I4 914 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 EVPLLA8MZ36 301 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 NPIPA7E9PJI5 369 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 NPIPB9F8W1W9 429 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 SCDO00767 359 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 KIAA0513O60268 411 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 FCMRO60667 390 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 TRAPPC6AO75865 159 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 KRT34O76011 436 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 ANGPTL1O95841 491 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 NPIPA8P0DM63 369 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 GPX2P18283 190 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 ASCL1P50553 236 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 ATP12AP54707 1039 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 C17orf67Q0P5P2 114 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 GPR68Q15743 365 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 SYPL1Q16563 259 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 FBXL19-AS1Q494R0 122 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 GPAT3Q53EU6 434 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 RUNDC3AQ59EK9 446 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 GKAP1Q5VSY0 366 aaPredicted RBP10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 AP1ARQ63HQ0 302 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 TYW3Q6IPR3 259 aaKnown RBP10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 APOOLQ6UXV4 268 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 OLIG3Q7RTU3 272 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 YTHDF3Q7Z739 585 aaKnown RBP10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 MARCH3Q86UD3 253 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 PLCZ1Q86YW0 608 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 TREML1Q86YW5 311 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 PM20D2Q8IYS1 436 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 ULK2Q8IYT8 1036 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 ZNF619Q8N2I2 560 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 ANKS4BQ8N8V4 417 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 PCYOX1LQ8NBM8 494 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 ANKRD27Q96NW4 1050 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 TRNT1Q96Q11 434 aaKnown RBP10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 TIMP4Q99727 224 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 SAP130Q9H0E3 1048 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 SLC6A15Q9H2J7 730 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 PPP4R1LQ9P1A2 415 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 MKLN1Q9UL63 735 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 WDR45Q9Y484 360 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 DSCAMO60469 2012 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 HEATR5AQ86XA9 2040 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 C15orf38-AP3S2A0A0A6YYH1 394 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 FXYD1O00168 92 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 NDUFB5O43674 189 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 TNFRSF21O75509 655 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 CBR3O75828 277 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 DCTN3O75935 186 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 H6PDO95479 791 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 EPPINO95925 133 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 NPPAP01160 153 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 CHRM4P08173 479 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 NR2F1P10589 423 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 COX4I1P13073 169 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 CRYZQ08257 329 aaKnown RBP10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 ZNF141Q15928 474 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 KLHL26Q53HC5 615 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 NHSL2Q5HYW2 709 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 VASNQ6EMK4 673 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 FRRS1Q6ZNA5 592 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 LRRC74BQ6ZQY2 392 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 KIF18BQ86Y91 864 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 MISPQ8IVT2 679 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 POU5F2Q8N7G0 328 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 ANKFN1Q8N957 763 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 FADS6Q8N9I5 356 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 RELL2Q8NC24 303 aaPredicted RBP10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 OIT3Q8WWZ8 545 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 PIGTQ969N2 578 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 DTNBP1Q96EV8 351 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 LRRC37BQ96QE4 947 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 SLC38A1Q9H2H9 487 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 IKZF5Q9H5V7 419 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 HHATLQ9HCP6 504 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 A4GALTQ9NPC4 353 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 CALML5Q9NZT1 146 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 KCNE5Q9UJ90 142 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 DTNAQ9Y4J8 743 aa10.75□□□□□ -0.69
SQSTM1-206ENST00000466342 IGLV3-32A0A0A0MS00 114 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 TMEM247A6NEH6 219 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 HSPB2A8KAH6 182 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 C17orf51A8MQB3 221 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 B4DXG7 233 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 H3BNH8 94 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 DVL2O14641 736 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 UGT2B17O75795 530 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 ACTL6AO96019 429 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 HRGP04196 525 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 BCHEP06276 602 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 NUDT7P0C024 238 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 TFPTP0C1Z6 253 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 ARAFP10398 606 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 PRDX6P30041 224 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 CRISP3P54108 245 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 MTPNP58546 118 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 CHRNEQ04844 493 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 GNA13Q14344 377 aa10.74□□□□□ -0.69
SQSTM1-206ENST00000466342 CAPRIN1Q14444 709 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms