RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 C1GALT1C1Q96EU7 318 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 LRRC46Q96FV0 321 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 TIMP4Q99727 224 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 NANOGQ9H9S0 305 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 EFCAB1Q9HAE3 211 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 CACYBPQ9HB71 228 aaKnown RBP16.02■□□□□ 0.16
COL7A1-205ENST00000465238 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.02■□□□□ 0.16
COL7A1-205ENST00000465238 CARD8Q9Y2G2 431 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 SLC6A5Q9Y345 797 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 NF1P21359 2839 aa16.02■□□□□ 0.15
COL7A1-205ENST00000465238 ZFHX3Q15911 3703 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 AGAP5A6NIR3 686 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 B4DXG7 233 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 SYT5O00445 386 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 DVL2O14641 736 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF264O43296 627 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 ZIC3O60481 467 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 CSTAP01040 98 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 DBIP07108 87 aaKnown RBP16.01■□□□□ 0.15
COL7A1-205ENST00000465238 ARAFP10398 606 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 UBL4AP11441 157 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 IL7RP16871 459 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 TCEA1P23193 301 aaKnown RBP16.01■□□□□ 0.15
COL7A1-205ENST00000465238 PRDX6P30041 224 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 DNAJA1P31689 397 aaKnown RBP16.01■□□□□ 0.15
COL7A1-205ENST00000465238 ART1P52961 327 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 CDK6Q00534 326 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF117Q03924 483 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 SELPLGQ14242 412 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 FGFBP1Q14512 234 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 CYP51A1Q16850 503 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 ACSF3Q4G176 576 aaPredicted RBP16.01■□□□□ 0.15
COL7A1-205ENST00000465238 PRAMEF8Q5VWM4 474 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 PRAMEF7Q5VXH5 474 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 HMGN2P46Q86SG4 172 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 IFNEQ86WN2 208 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 LACC1Q8IV20 430 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 TMCO5AQ8N6Q1 288 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 CCDC197Q8NCU1 140 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 NFKBIDQ8NI38 313 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 BBS10Q8TAM1 723 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 SLC39A3Q9BRY0 314 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 PRDM14Q9GZV8 571 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 QRSL1Q9H0R6 528 aaKnown RBP16.01■□□□□ 0.15
COL7A1-205ENST00000465238 DNAJB12Q9NXW2 375 aaKnown RBP16.01■□□□□ 0.15
COL7A1-205ENST00000465238 SLC35A3Q9Y2D2 325 aa16.01■□□□□ 0.15
COL7A1-205ENST00000465238 RPH3AQ9Y2J0 694 aaPredicted RBP16.01■□□□□ 0.15
COL7A1-205ENST00000465238 A0A087WZY1 265 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 CENPVL1A0A0U1RR11 272 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 CTAG2O75638 210 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 CYP7B1O75881 506 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 NUDT14O95848 222 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 SLC6A2P23975 617 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 CEACAM8P31997 349 aaPredicted RBP16■□□□□ 0.15
COL7A1-205ENST00000465238 TIMP3P35625 211 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 KIR2DL3P43628 341 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 ASCL1P50553 236 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 P2RX1P51575 399 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF41P51814 821 aaPredicted RBP16■□□□□ 0.15
COL7A1-205ENST00000465238 KCNJ10P78508 379 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 GLYR1Q49A26 553 aaPredicted RBP16■□□□□ 0.15
COL7A1-205ENST00000465238 NHSL2Q5HYW2 709 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 RPS26P11Q5JNZ5 115 aaPredicted RBP16■□□□□ 0.15
COL7A1-205ENST00000465238 VASNQ6EMK4 673 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 REEP3Q6NUK4 255 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 CBLN3Q6UW01 205 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 ZZZ3Q8IYH5 903 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 C10orf111Q8N326 155 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 RELL2Q8NC24 303 aaPredicted RBP16■□□□□ 0.15
COL7A1-205ENST00000465238 TOR1AIP2Q8NFQ8 470 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 OR8J3Q8NGG0 315 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 WDR60Q8WVS4 1066 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 ABTB1Q969K4 478 aaPredicted RBP16■□□□□ 0.15
COL7A1-205ENST00000465238 SFXN2Q96NB2 322 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 ECSITQ9BQ95 431 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 LAT2Q9GZY6 243 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 TMEM38AQ9H6F2 299 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 KAT8Q9H7Z6 458 aaKnown RBP16■□□□□ 0.15
COL7A1-205ENST00000465238 BCL2L10Q9HD36 194 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF629Q9UEG4 869 aaPredicted RBP16■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF232Q9UNY5 417 aa16■□□□□ 0.15
COL7A1-205ENST00000465238 HEATR5AQ86XA9 2040 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 HRNRQ86YZ3 2850 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-205ENST00000465238 FXYD1O00168 92 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 NDUFAB1O14561 156 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 OIP5O43482 229 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 PGM3O95394 542 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 ACTL6AO96019 429 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 IL2RAP01589 272 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 UBTFL6P0CB48 400 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-205ENST00000465238 BMP7P18075 431 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 BMP5P22003 454 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 UQCRC1P31930 480 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 CCR4P51679 360 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 SUMO3P55854 103 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-205ENST00000465238 RBBP4Q09028 425 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 SCARB2Q14108 478 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 NDUFAF6Q330K2 333 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 FBXL19-AS1Q494R0 122 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 RABL3Q5HYI8 236 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms