RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 FAM26EQ8N5C1 309 aa10.83□□□□□ -0.68
NPHP4-204ENST00000460696 SMPDL3BQ92485 455 aa10.83□□□□□ -0.68
NPHP4-204ENST00000460696 TNFRSF13CQ96RJ3 184 aa10.83□□□□□ -0.68
NPHP4-204ENST00000460696 FBRSQ9HAH7 460 aa10.83□□□□□ -0.68
NPHP4-204ENST00000460696 CKLFQ9UBR5 152 aa10.83□□□□□ -0.68
NPHP4-204ENST00000460696 PRODH2Q9UF12 536 aa10.83□□□□□ -0.68
NPHP4-204ENST00000460696 LAMP5Q9UJQ1 280 aa10.83□□□□□ -0.68
NPHP4-204ENST00000460696 DAPP1Q9UN19 280 aa10.83□□□□□ -0.68
NPHP4-204ENST00000460696 EXO1Q9UQ84 846 aaKnown RBP10.83□□□□□ -0.68
NPHP4-204ENST00000460696 AK6Q9Y3D8 172 aaKnown RBP10.83□□□□□ -0.68
NPHP4-204ENST00000460696 SCN2AQ99250 2005 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 A0A1W2PS29 197 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 LYRM1O43325 122 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 RAB3BP20337 219 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 GNALP38405 381 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 ACTC1P68032 377 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 ACTA1P68133 377 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CD300CQ08708 224 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CRMP1Q14194 572 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 ALG11Q2TAA5 492 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 MBOAT2Q6ZWT7 520 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 SMRP1Q8NCR6 262 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 WDR34Q96EX3 536 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PLA2G12AQ9BZM1 189 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PIGUQ9H490 435 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 SLC2A4RGQ9NR83 387 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 RASD1Q9Y272 281 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 DNAH12Q6ZR08 3092 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 HYKKA2RU49 373 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PRAMEF26H0Y7S4 382 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PDCD5O14737 125 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 SLC19A2O60779 497 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PLGP00747 810 aaPredicted RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 ZNF823P16415 610 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PRKAR1BP31321 381 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 MAZP56270 477 aaKnown RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 SNRPD2P62316 118 aaKnown RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 ERVK-25P63136 954 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 GXYLT1Q4G148 440 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 MEPCEQ7L2J0 689 aaKnown RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 AVL9Q8NBF6 648 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CNN2Q99439 309 aaKnown RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 RNF121Q9H920 327 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 ELL3Q9HB65 397 aaPredicted RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CLEC1BQ9P126 229 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 A4GNTQ9UNA3 340 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PCYT1BQ9Y5K3 369 aaPredicted RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 VWA8A3KMH1 1905 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 SOD1P00441 154 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CD2P06729 351 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 TNFRSF4P43489 277 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PCBP3P57721 371 aaKnown RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CTXN1P60606 82 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 LSM11P83369 360 aaKnown RBP eCLIP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 GAS6Q14393 721 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 OCLNQ16625 522 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 ACSM3Q53FZ2 586 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PHF19Q5T6S3 580 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 LAIR1Q6GTX8 287 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 LEG1Q6P5S2 330 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 SLC29A4Q7RTT9 530 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CRIPAKQ8N1N5 446 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 ASCC1Q8N9N2 400 aaKnown RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CHST4Q8NCG5 386 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 TOR1AIP2Q8NFQ8 470 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 SLC37A2Q8TED4 501 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CNOT9Q92600 299 aaKnown RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 SDF2Q99470 211 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 PRDM7Q9NQW5 492 aa10.82□□□□□ -0.68
NPHP4-204ENST00000460696 EIF3KQ9UBQ5 218 aaKnown RBP10.82□□□□□ -0.68
NPHP4-204ENST00000460696 CDC14CA4D256 554 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 DRD5P21918 477 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 EIF1AXP47813 144 aaKnown RBP10.81□□□□□ -0.68
NPHP4-204ENST00000460696 DNASE1L1P49184 302 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 TPMTP51580 245 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 NTRK2Q16620 822 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 DEFB133Q30KQ1 61 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 LINC00299Q6ZSB3 139 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 MS4A15Q8N5U1 240 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 NLGN4YQ8NFZ3 816 aaPredicted RBP10.81□□□□□ -0.68
NPHP4-204ENST00000460696 PFN4Q8NHR9 129 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 TRMT10AQ8TBZ6 339 aaKnown RBP10.81□□□□□ -0.68
NPHP4-204ENST00000460696 TNFAIP8L1Q8WVP5 186 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 THAP4Q8WY91 577 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 FUZQ9BT04 418 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 SLC38A1Q9H2H9 487 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 HINT3Q9NQE9 182 aaKnown RBP10.81□□□□□ -0.68
NPHP4-204ENST00000460696 OBP2AQ9NY56 170 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 FTSJ1Q9UET6 329 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 A0A0A6YYD5 115 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 NPIPB8E9PQR5 432 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 FGF17O60258 216 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 PRKNO60260 465 aaPredicted RBP10.81□□□□□ -0.68
NPHP4-204ENST00000460696 PPM1BO75688 479 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 APBB3O95704 486 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 GABRA5P31644 462 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 TRIM61Q5EBN2 209 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 ZNF836Q6ZNA1 936 aa10.81□□□□□ -0.68
NPHP4-204ENST00000460696 GDPD3Q7L5L3 318 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms