RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ACBD7Q8N6N7 88 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 SAMD12Q8N8I0 201 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 TTLQ8NG68 377 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 OR5T3Q8NGG3 340 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 SUN5Q8TC36 379 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 FANK1Q8TC84 345 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 SMARCD2Q92925 531 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 C4orf36Q96KX1 117 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 GPR137Q96N19 417 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 SMAD5Q99717 465 aaKnown RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 WDR45Q9Y484 360 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 POM121BA6NF01 834 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 ZNF860A6NHJ4 632 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 H0Y8X5 98 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 EEF1E1O43324 174 aaKnown RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 CHST10O43529 356 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 LDB3O75112 727 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 CRYZL1O95825 349 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 IGKV1D-16P01601 117 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 PRKAR1AP10644 381 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 PPP2CBP62714 309 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 PPP2CAP67775 309 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 SLC3A1Q07837 685 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 FAM53BQ14153 422 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 GARNL3Q5VVW2 1013 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 LYPD4Q6UWN0 246 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 PLCZ1Q86YW0 608 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 ZPLD1Q8TCW7 415 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 CREB3L1Q96BA8 519 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 MS4A4EQ96PG1 132 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 MTHFD2LQ9H903 347 aaPredicted RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 MCCC2Q9HCC0 563 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 USP36Q9P275 1121 aaKnown RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 KIAA0100Q14667 2235 aaKnown RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 TRAV6A0A075B6T7 132 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 FAM25AB3EWG3 89 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 FAM25CB3EWG5 89 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 FAM25GB3EWG6 89 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 C1QTNF3-AMACRE9PGA6 284 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 TRIM3O75382 744 aaPredicted RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 SCO1O75880 301 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 OR2B3O76000 313 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 MAT2AP31153 395 aaKnown RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 UQCRC1P31930 480 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 ADAM15Q13444 863 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 CRMP1Q14194 572 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 ZC3H14Q6PJT7 736 aaKnown RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 ASPGQ86U10 573 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 TIGD4Q8IY51 512 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 GHDCQ8N2G8 530 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 LRRC25Q8N386 305 aaPredicted RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 ADAMTS15Q8TE58 950 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 TMEM239Q8WW34 195 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 GCDHQ92947 438 aaPredicted RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 FAM131CQ96AQ9 280 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 ZNF524Q96C55 264 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 WDR89Q96FK6 387 aaPredicted RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 HS6ST2Q96MM7 605 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 RPP25Q9BUL9 199 aaKnown RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 TRAF4Q9BUZ4 470 aaPredicted RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 ZCCHC4Q9H5U6 513 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 CMC2Q9NRP2 79 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 WSB2Q9NYS7 404 aaPredicted RBP9.12□□□□□ -0.95
SS18-203ENST00000415083 MAT2BQ9NZL9 334 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 PTGFRNQ9P2B2 879 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 ICAM5Q9UMF0 924 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 NUP210LQ5VU65 1888 aa9.12□□□□□ -0.95
SS18-203ENST00000415083 A0A1W2PQ72 361 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 FGF17O60258 216 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 SLC19A2O60779 497 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 MPDZO75970 2070 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 CD3GP09693 182 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 SBK2P0C263 348 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 SNRPBP14678 240 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 IFNGR2P38484 337 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 EMDP50402 254 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 CCR6P51684 374 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 SHC2P98077 582 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 EXOSC7Q15024 291 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 DEFB134Q4QY38 66 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 RNASE12Q5GAN4 147 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 ZNF57Q68EA5 555 aaPredicted RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 RTL10Q7L3V2 364 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 PRSS45Q7RTY3 260 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 LRRC28Q86X40 367 aaPredicted RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 GRPEL2Q8TAA5 225 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 ZCCHC10Q8TBK6 192 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 NT5CQ8TCD5 201 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 CDCP1Q9H5V8 836 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 TRBV23OR9-2A0A075B6M9 112 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 KAT7O95251 611 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 WNT1P04628 370 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 TJAP1Q5JTD0 557 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 TMEM240Q5SV17 173 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 FIGNL1Q6PIW4 674 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 TMPRSS11FQ6ZWK6 438 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 CEACAM19Q7Z692 300 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 OR10H4Q8NGA5 316 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 TRMT10AQ8TBZ6 339 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 AKAP1Q92667 903 aaKnown RBP eCLIP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms