RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 CYTIPO60759 359 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SHOX2O60902 331 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 LILRB5O75023 590 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 BANF1O75531 89 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SCAF4O95104 1147 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 FCER2P06734 321 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 H2AFB2P0C5Z0 115 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 XRCC1P18887 633 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 G0S2P27469 103 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 MARCKSL1P49006 195 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 GBX2P52951 348 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 RELAQ04206 551 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PEA15Q15121 130 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CCBE1Q6UXH8 406 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF619Q8N2I2 560 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 RASGEF1CQ8N431 466 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CPSF7Q8N684 471 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 FAM86B1Q8N7N1 296 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PROKR2Q8NFJ6 384 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 OR4C5Q8NGB2 326 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 OR5K2Q8NHB8 316 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 TWIST2Q8WVJ9 160 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF845Q96IR2 970 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 C12orf49Q9H741 205 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF358Q9NW07 568 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 LNP1A1A4G5 178 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ITM2AO43736 263 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 EPHA3P29320 983 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CARD18P57730 90 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ERVPABLB-1P60509 514 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SNRPD2P62316 118 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 AGBL4Q5VU57 503 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 KANK2Q63ZY3 851 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 JMJD6Q6NYC1 403 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SLC2A7Q6PXP3 512 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PLEKHG7Q6ZR37 379 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CPEB2Q7Z5Q1 589 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SCCPDHQ8NBX0 429 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 OR11G2Q8NGC1 345 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SLC44A1Q8WWI5 657 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 S100A16Q96FQ6 103 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 AURKBQ96GD4 344 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PITHD1Q9GZP4 211 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ESRP2Q9H6T0 727 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 TPT1P8Q9HAU6 139 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 NUFIP1Q9UHK0 495 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 WASH4PA8MWX3 477 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SLC22A2O15244 555 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 GDF9O60383 454 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 GALR3O60755 368 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 KLKB1P03952 638 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 GBAP04062 536 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 HLA-DPB1P04440 258 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 MAPK3P27361 379 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 AQP1P29972 269 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PRLHRP49683 370 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 RAB38P57729 211 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CAMK2DQ13557 499 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 VEZF1Q14119 521 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 MFSD13AQ14CX5 517 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 LRRC37A5PQ49AS3 106 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 IER5LQ5T953 404 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SPNS3Q6ZMD2 512 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 OR5M9Q8NGP3 310 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CASTOR1Q8WTX7 329 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 RSC1A1Q92681 617 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 BORCS8Q96FH0 119 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 C1QTNF2Q9BXJ5 285 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 GON7Q9BXV9 100 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 BEX2Q9BXY8 128 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 KIR3DX1Q9H7L2 352 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 NTN4Q9HB63 628 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 NANSQ9NR45 359 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 LHX3Q9UBR4 397 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SLC2A6Q9UGQ3 507 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SCN9AQ15858 1988 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 TRPM7Q96QT4 1865 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PIGBOS1A0A0B4J2F0 54 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 A0A1B0GVI7 797 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 TRBC2A0A5B9 178 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 DAPL1A0PJW8 107 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 HRGP04196 525 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 IFNW1P05000 195 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 POU2F1P14859 743 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PRPS1L1P21108 318 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ACVR2AP27037 513 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 GLP1RP43220 463 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SLC6A8P48029 635 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SLC26A5P58743 744 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 GPR85P60893 370 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 FLI1Q01543 452 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 LASP1Q14847 261 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PCK2Q16822 640 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 MSS51Q4VC12 460 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CARM1Q86X55 608 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 OR10H4Q8NGA5 316 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 DOK4Q8TEW6 326 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ROPN1LQ96C74 230 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 NUDT22Q9BRQ3 303 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 RAB9BQ9NP90 201 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms