RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TP53TG5Q9Y2B4 290 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 TESMINQ9Y4I5 508 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 K7EM74 188 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 DEAF1O75398 565 aaPredicted RBP16.45■□□□□ 0.22
SDC1-203ENST00000403076 CBR3O75828 277 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 LDLRP01130 860 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 FAM87AP0C7U9 286 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 GP1BBP13224 206 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 ZNF41P51814 821 aaPredicted RBP16.45■□□□□ 0.22
SDC1-203ENST00000403076 SPIBQ01892 262 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 TOMM20Q15388 145 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 LINC00303Q3SY05 128 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 IQCCQ4KMZ1 466 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 WBP2NLQ6ICG8 309 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 OR2T5Q6IEZ7 315 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 ASB18Q6ZVZ8 466 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 FAM98AQ8NCA5 519 aaKnown RBP16.45■□□□□ 0.22
SDC1-203ENST00000403076 OR2T29Q8NH02 315 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 C9orf43Q8TAL5 461 aaPredicted RBP16.45■□□□□ 0.22
SDC1-203ENST00000403076 ADAMTS16Q8TE57 1224 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 LRTOMTQ8WZ04 291 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 NR4A3Q92570 626 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 NTNG2Q96CW9 530 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 PRRC1Q96M27 445 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 MFRPQ9BY79 579 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 ZFP64Q9NPA5 681 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 TAS2R10Q9NYW0 307 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 RHCGQ9UBD6 479 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 VDAC3Q9Y277 283 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 HRH3Q9Y5N1 445 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 TNRC6AQ8NDV7 1962 aaKnown RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 TRAPPC13A5PLN9 417 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 PINLYPA6NC86 204 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 CLOCKO15516 846 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 HTR2AP28223 471 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 ZNF169Q14929 603 aaPredicted RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 QPRTQ15274 297 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 TOMM34Q15785 309 aaPredicted RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 AMIGO2Q86SJ2 522 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 FADS6Q8N9I5 356 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 PHF10Q8WUB8 498 aaKnown RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 TMEM234Q8WY98 164 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 DTNBP1Q96EV8 351 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 KLHDC3Q9BQ90 382 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 POLR2J2Q9GZM3 115 aaKnown RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 POLR2J3Q9H1A7 115 aaKnown RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 ZNF71Q9NQZ8 489 aaPredicted RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 DNAJB9Q9UBS3 223 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 B4GALT7Q9UBV7 327 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 RIMS3Q9UJD0 308 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 DKKL1Q9UK85 242 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 A4GNTQ9UNA3 340 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 PCDHGB6Q9Y5F9 930 aa16.44■□□□□ 0.22
SDC1-203ENST00000403076 TPRP12270 2363 aaKnown RBP16.44■□□□□ 0.22
SDC1-203ENST00000403076 FAAHO00519 579 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 ADAMDEC1O15204 470 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 MGRN1O60291 552 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 OR5F1O95221 314 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 TCEA1P23193 301 aaKnown RBP16.43■□□□□ 0.22
SDC1-203ENST00000403076 DPP4P27487 766 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 RRM2P31350 389 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 RFC3P40938 356 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 RIPK1Q13546 671 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 ARSKQ6UWY0 536 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 LSMEM1Q8N8F7 131 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 SLC41A3Q96GZ6 507 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 PKP2Q99959 881 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 BDH2Q9BUT1 245 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 ADNPQ9H2P0 1102 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 REEP1Q9H902 201 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 ACACBO00763 2458 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 DMXL2Q8TDJ6 3036 aa16.43■□□□□ 0.22
SDC1-203ENST00000403076 HEATR5AQ86XA9 2040 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 A0A1B0GWA3 101 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 LRRC3CA6NJW4 275 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 B4DXG7 233 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 FFAR1O14842 300 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 SEMA7AO75326 666 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 GADD45GO95257 159 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 H1F0P07305 194 aaKnown RBP16.42■□□□□ 0.22
SDC1-203ENST00000403076 ANPEPP15144 967 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 GDF1P27539 372 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 SLC1A3P43003 542 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 CDH12P55289 794 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 DSCR4P56555 118 aaPredicted RBP16.42■□□□□ 0.22
SDC1-203ENST00000403076 SESN3P58005 492 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 SMIM11AP58511 58 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 ST3GAL3Q11203 375 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 FOXO1Q12778 655 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 ATP6AP1Q15904 470 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 ZNF613Q6PF04 617 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 ULK3Q6PHR2 472 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 TSPYL5Q86VY4 417 aaPredicted RBP16.42■□□□□ 0.22
SDC1-203ENST00000403076 PQLC1Q8N2U9 271 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 OR52J3Q8NH60 311 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 DNAJA4Q8WW22 397 aaPredicted RBP16.42■□□□□ 0.22
SDC1-203ENST00000403076 C1GALT1C1Q96EU7 318 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 CNTNAP3BQ96NU0 1288 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 CNTNAP3Q9BZ76 1288 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms