RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 CHDHQ8NE62 594 aaPredicted RBP13.16□□□□□ -0.3
SEC13-208ENST00000397109 SLC26A7Q8TE54 656 aa13.16□□□□□ -0.3
SEC13-208ENST00000397109 GTF2H4Q92759 462 aa13.16□□□□□ -0.3
SEC13-208ENST00000397109 POP5Q969H6 163 aaKnown RBP13.16□□□□□ -0.3
SEC13-208ENST00000397109 C14orf79Q96F83 325 aa13.16□□□□□ -0.3
SEC13-208ENST00000397109 SH3GL1Q99961 368 aa13.16□□□□□ -0.3
SEC13-208ENST00000397109 TRIM8Q9BZR9 551 aa13.16□□□□□ -0.3
SEC13-208ENST00000397109 C6orf203Q9P0P8 240 aaPredicted RBP13.16□□□□□ -0.3
SEC13-208ENST00000397109 ZNF337Q9Y3M9 751 aa13.16□□□□□ -0.3
SEC13-208ENST00000397109 AP4B1Q9Y6B7 739 aa13.16□□□□□ -0.3
SEC13-208ENST00000397109 KCNE3Q9Y6H6 103 aa13.16□□□□□ -0.3
SEC13-208ENST00000397109 RCBTB2O95199 551 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 TMIGD3P0DMS9 266 aaPredicted RBP13.15□□□□□ -0.3
SEC13-208ENST00000397109 ZNF17P17021 662 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 HOXB9P17482 250 aaPredicted RBP13.15□□□□□ -0.3
SEC13-208ENST00000397109 BMP5P22003 454 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 SLC6A2P23975 617 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 PEX19P40855 299 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 ASCL1P50553 236 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 ZNF41P51814 821 aaPredicted RBP13.15□□□□□ -0.3
SEC13-208ENST00000397109 ZNF136P52737 540 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 NFYCQ13952 458 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 TMEM44Q2T9K0 475 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 KLHL26Q53HC5 615 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 LRIF1Q5T3J3 769 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 ATAD3BQ5T9A4 648 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 LRRC74BQ6ZQY2 392 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 GRAMD2AQ8IUY3 354 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 SLC15A3Q8IY34 581 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 TRIML2Q8N7C3 387 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 C9orf106Q8NAJ2 232 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 NAXEQ8NCW5 288 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 OR5D16Q8NGK9 328 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 B4GALNT2Q8NHY0 566 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 PHOSPHO1Q8TCT1 267 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 ZBTB8AQ96BR9 441 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 CCDC124Q96CT7 223 aaKnown RBP13.15□□□□□ -0.3
SEC13-208ENST00000397109 ITCHQ96J02 903 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 SDF2Q99470 211 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 TACO1Q9BSH4 297 aaKnown RBP13.15□□□□□ -0.3
SEC13-208ENST00000397109 TRIM15Q9C019 465 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 CLCF1Q9UBD9 225 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 FOXD3Q9UJU5 478 aaPredicted RBP13.15□□□□□ -0.3
SEC13-208ENST00000397109 GMEB1Q9Y692 573 aa13.15□□□□□ -0.3
SEC13-208ENST00000397109 MED12LQ86YW9 2145 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 C7orf72A4D263 438 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 PRORSD1PA6NEY8 169 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 AQP12BA6NM10 295 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 GTPBP1O00178 669 aaKnown RBP13.14□□□□□ -0.31
SEC13-208ENST00000397109 SYT5O00445 386 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 RFXANKO14593 260 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 HCRTR2O43614 444 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 GMFGO60234 142 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 TNFRSF21O75509 655 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 STX11O75558 287 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 CHI3L1P36222 383 aaPredicted RBP13.14□□□□□ -0.31
SEC13-208ENST00000397109 SLC7A2P52569 658 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 RPS3AP61247 264 aaKnown RBP13.14□□□□□ -0.31
SEC13-208ENST00000397109 RPS26P62854 115 aaKnown RBP13.14□□□□□ -0.31
SEC13-208ENST00000397109 TXNL4AP83876 142 aaKnown RBP13.14□□□□□ -0.31
SEC13-208ENST00000397109 ARHGAP11BQ3KRB8 267 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 FBXL19-AS1Q494R0 122 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 SAXO2Q658L1 398 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 ARSKQ6UWY0 536 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 C16orf62Q7Z3J2 963 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 AQP12AQ8IXF9 295 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 UBQLNLQ8IYU4 475 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 ZNF295-AS1Q8N0V1 137 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 RELL2Q8NC24 303 aaPredicted RBP13.14□□□□□ -0.31
SEC13-208ENST00000397109 OR8J3Q8NGG0 315 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 NEURL3Q96EH8 262 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 SH3YL1Q96HL8 342 aaPredicted RBP13.14□□□□□ -0.31
SEC13-208ENST00000397109 PANX1Q96RD7 426 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 INPP5KQ9BT40 448 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 OR51I1Q9H343 314 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 SERHL2Q9H4I8 314 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 VDAC3Q9Y277 283 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 DTNAQ9Y4J8 743 aa13.14□□□□□ -0.31
SEC13-208ENST00000397109 KIAA1549Q9HCM3 1950 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 A0A096LPI6 279 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 TRBV5-3A0A0A0MS03 114 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 NPIPB9F8W1W9 429 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 H3BML4 177 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 FXYD1O00168 92 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 CASQ2O14958 399 aaPredicted RBP13.13□□□□□ -0.31
SEC13-208ENST00000397109 C8BP07358 591 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 GUSBP08236 651 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 CDKN2CP42773 168 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 ANXA11P50995 505 aaKnown RBP13.13□□□□□ -0.31
SEC13-208ENST00000397109 SUMO3P55854 103 aaPredicted RBP13.13□□□□□ -0.31
SEC13-208ENST00000397109 MS4A2Q01362 244 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 CD226Q15762 336 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 PAGE3Q5JUK9 113 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 OR2A2Q6IF42 318 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 POMZP3Q6PJE2 187 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 SLC2A7Q6PXP3 512 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 P4HA3Q7Z4N8 544 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 DHDDSQ86SQ9 333 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 CLEC4FQ8N1N0 589 aa13.13□□□□□ -0.31
SEC13-208ENST00000397109 GTPBP8Q8N3Z3 284 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms