RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 IGHV1OR21-1A0A087WYE8 117 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 NCBP2LA6PVI3 153 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 CDK2AP1O14519 115 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 SHOXO15266 292 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 SPRY3O43610 288 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 HPP00738 406 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 RPS26P62854 115 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 TNFRSF17Q02223 184 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 WBP2NLQ6ICG8 309 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 RPL13AP3Q6NVV1 102 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 PXKQ7Z7A4 578 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 ZDHHC21Q8IVQ6 265 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 THRSPQ92748 146 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 FAM46AQ96IP4 442 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 DGCR6LQ9BY27 220 aa8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 VSX1Q9NZR4 365 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-202ENST00000381753 CCDC182A6NF36 153 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 CXCL13O43927 109 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 RLN2P04090 185 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 BPGMP07738 259 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 FAM157BP0CG42 384 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 HOXD8P13378 290 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 TACR3P29371 465 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 BMI1P35226 326 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 PDK3Q15120 406 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 C1QL3Q5VWW1 255 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 ASRGL1Q7L266 308 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 GLIS1Q8NBF1 620 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 NOA1Q8NC60 698 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 SP7Q8TDD2 431 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 KLHL15Q96M94 604 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 COPS3Q9UNS2 423 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 B3GNT3Q9Y2A9 372 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 SPO11Q9Y5K1 396 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 COMMD3-BMI1R4GMX3 469 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 TARM1B6A8C7 271 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 PYCARD-AS1I3L0S3 204 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 SYT7O43581 403 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 MAPK3P27361 379 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 CDK9P50750 372 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 CDKL1Q00532 357 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 QPRTQ15274 297 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 LRRC10Q5BKY1 277 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 MTX3Q5HYI7 312 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 ALKAL1Q6UXT8 129 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 LRRC17Q8N6Y2 441 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 BSCL2Q96G97 398 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 AURKBQ96GD4 344 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 FAM129BQ96TA1 746 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 C1QTNF2Q9BXJ5 285 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 S1PR5Q9H228 398 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 IL17CQ9P0M4 197 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 GXYLT2A0PJZ3 443 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF732B4DXR9 585 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 KLKB1P03952 638 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 NPR2P20594 1047 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 STT3AP46977 705 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 LILRA2Q8N149 483 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 TSPEARQ8WU66 669 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 FKBP10Q96AY3 582 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 LRR1Q96L50 414 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 NUDT9Q9BW91 350 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 GFOD1Q9NXC2 390 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 GOLGA4Q13439 2230 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 A8MT66 165 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 H0YIG0 161 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 NDUFB3O43676 98 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 BCAS1O75363 584 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 GOSR1O95249 250 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 LIFP15018 202 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 GGT5P36269 586 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 CEACAM7Q14002 265 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 LPCAT4Q643R3 524 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 FCRLAQ7L513 359 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 BEST3Q8N1M1 668 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 FBXW8Q8N3Y1 598 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 SNRNP27Q8WVK2 155 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 NEIL2Q969S2 332 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 PGAP3Q96FM1 320 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 PEBP4Q96S96 227 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 MAPKAP1Q9BPZ7 522 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 PILRBQ9UKJ0 227 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 USP3Q9Y6I4 520 aa8.56□□□□□ -1.04
LIMCH1-202ENST00000381753 A0A087WXM4 84 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ZBTB42B2RXF5 422 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 HHLA1C9JL84 531 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 TSPAN4O14817 238 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 PHYHO14832 338 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 MRPL3P09001 348 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF12P17014 697 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ARR3P36575 388 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 PCBP3P57721 371 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 SLC25A11Q02978 314 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF684Q5T5D7 378 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 GLT8D1Q68CQ7 371 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 C12orf54Q6X4T0 127 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 COMMD6Q7Z4G1 85 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 CNTD1Q8N815 330 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 OR56B2PQ8NGI1 322 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 PTPMT1Q8WUK0 201 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms