RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 TSPAN5P62079 268 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 PPP1CAP62136 330 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 OC90Q02509 493 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-203ENST00000354674 HSF2Q03933 536 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 MPEG1Q2M385 716 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 BICRALQ6AI39 1079 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 ZZZ3Q8IYH5 903 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 SVOPLQ8N434 492 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 DPP10Q8N608 796 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 KRTCAP2Q8N6L1 136 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 FAM181AQ8N9Y4 354 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 OR4C6Q8NH72 309 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 DMRTA2Q96SC8 542 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 SLC38A3Q99624 504 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 SLC6A16Q9GZN6 736 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 FSCN3Q9NQT6 498 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 PRDM9Q9NQV7 894 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 SDHAF3Q9NRP4 125 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 IMPAD1Q9NX62 359 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 AHSPQ9NZD4 102 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 CACNA1EQ15878 2313 aa9.39□□□□□ -0.91
SYNE1-203ENST00000354674 LY6G6EA0A0G2JKS1 128 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 TEX13CA0A0J9YWL9 993 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 IL6P05231 212 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 S100A6P06703 90 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 SPP1P10451 314 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 PNLIPP16233 465 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 PRPS1L1P21108 318 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 ASMTP46597 345 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 FAM174BQ3ZCQ3 159 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 IRAK1BP1Q5VVH5 260 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 ELP2Q6IA86 826 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 MZT2BQ6NZ67 158 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 DLEU7Q6UYE1 221 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 CAMKMTQ7Z624 323 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 MYDGFQ969H8 173 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 F2RL3Q96RI0 385 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 DDOQ99489 341 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 EBPLQ9BY08 206 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 REG4Q9BYZ8 158 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 CHRNA10Q9GZZ6 450 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 DDX31Q9H8H2 851 aaKnown RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 IL21RQ9HBE5 538 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 RBFOX1Q9NWB1 397 aaKnown RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 LRIT1Q9P2V4 623 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 MAPRE3Q9UPY8 281 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 PCDHGA6Q9Y5G7 932 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 U3KQA8 63 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 PATE3B3GLJ2 98 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 NDUFS4O43181 175 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 LANCL1O43813 399 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 PCDH7O60245 1069 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 ANXA4P09525 319 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 TYRP1P17643 537 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 CHMP24386 653 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 FPR3P25089 353 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 GSTM5P46439 218 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 KCNJ5P48544 419 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 RAB13P51153 203 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 VLDLRP98155 873 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 INSL4Q14641 139 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 GINS1Q14691 196 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 IL20RBQ6UXL0 311 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 NR4A3Q92570 626 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 GTPBP3Q969Y2 492 aaKnown RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 RGMAQ96B86 450 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 MS4A6EQ96DS6 147 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 ART5Q96L15 291 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 SPRTNQ9H040 489 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 GAREM1Q9H706 876 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 METTL17Q9H7H0 456 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 CHMP1AQ9HD42 196 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 RLIMQ9NVW2 624 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 OR10H1Q9Y4A9 318 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 PCDHGA5Q9Y5G8 931 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 CLCA1A8K7I4 914 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 SAP18O00422 153 aaKnown RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 SH3BGRLO75368 114 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 CFIP05156 583 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 S100A9P06702 114 aaKnown RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 ETV6P41212 452 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 TSFMP43897 325 aaKnown RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 ZNF763Q0D2J5 394 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 TIGD3Q6B0B8 471 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 ARMC6Q6NXE6 501 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 MSANTD1Q6ZTZ1 278 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 DNAJC22Q8N4W6 341 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 UXS1Q8NBZ7 420 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 EDARADDQ8WWZ3 215 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 ZNF566Q969W8 418 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 C1GALT1C1Q96EU7 318 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 TSSK3Q96PN8 268 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 PFDN5Q99471 154 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 TREX2Q9BQ50 279 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 DPH2Q9BQC3 489 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 EVA1AQ9H8M9 152 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 MYNNQ9NPC7 610 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 C1GALT1Q9NS00 363 aa9.38□□□□□ -0.91
SYNE1-203ENST00000354674 MRPL15Q9P015 296 aaKnown RBP9.38□□□□□ -0.91
SYNE1-203ENST00000354674 SEMA5BQ9P283 1151 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms