RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CRTAC1Q9NQ79 661 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 OSGIN1Q9UJX0 560 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SLC6A14Q9UN76 642 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 A0A1B0GV72 72 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 BUD23O43709 281 aaKnown RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 RPLP1P05386 114 aaKnown RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SNHG28P0DPA3 235 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 FBXO16Q8IX29 292 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 CCDC74AQ96AQ1 378 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 HMCESQ96FZ2 354 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 QTRT2Q9H974 415 aaKnown RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 PCDHA2Q9Y5H9 948 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SGK494L7N484 410 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 GABRPO00591 440 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 DVL2O14641 736 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SIRPB2Q5JXA9 342 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 ETV3LQ6ZN32 361 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 NETO2Q8NC67 525 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 OR52N1Q8NH53 320 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 TRMT2BQ96GJ1 504 aaKnown RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 FBXL18Q96ME1 805 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 DIMT1Q9UNQ2 313 aaKnown RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 LY86O95711 162 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 ABHD16AO95870 558 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 AKR1A1P14550 325 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 GDNFP39905 211 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 PIGFQ07326 219 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 ERN2Q76MJ5 926 aaKnown RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 DNAJC5GQ8N7S2 189 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 OR9A4Q8NGU2 314 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SOCS4Q8WXH5 440 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 HBEGFQ99075 208 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 CXCL11O14625 94 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 TCAPO15273 167 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 LGALS2P05162 132 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 UBE2MP61081 183 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 MS4A2Q01362 244 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 CXorf58Q96LI9 332 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 TESQ9UGI8 421 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 SCN11AQ9UI33 1791 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 SIX3O95343 332 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 CALCBP10092 127 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 PIM1P11309 404 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ATP1B2P14415 290 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ACPPP15309 386 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF26P17031 533 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 INCA1Q0VD86 236 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 SFXN4Q6P4A7 337 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 PCDHA9Q9Y5H5 950 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 GLUD1P00367 558 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 MPC1LP0DKB6 136 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 RPE65Q16518 533 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 OR1S2Q8NGQ3 325 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 M1APQ8TC57 530 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 VIPP01282 170 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 KLK1P06870 262 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 CR2P20023 1033 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 FDXRP22570 491 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ACSM1Q08AH1 577 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 PAGE3Q5JUK9 113 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 NLRC3Q7RTR2 1065 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 GRINAQ7Z429 371 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 NRMQ8IXM6 262 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 RNF113BQ8IZP6 322 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 TSLPQ969D9 159 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ZDHHC11Q9H8X9 412 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF331Q9NQX6 463 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 C2orf42Q9NWW7 574 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 CXXC1Q9P0U4 656 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 A0A087X0M5 115 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 MYOCOSA0A1B0GUC4 107 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 A0A1B0GX30 115 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 BLOC1S5-TXNDC5H3BN57 136 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 NDUFB2O95178 105 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 CNOT4O95628 575 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 GALP22466 123 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 SUOXP51687 545 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 DIO3P55073 304 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 MLC1Q15049 377 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 GLYR1Q49A26 553 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 KAZALD1Q96I82 304 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 PPP1R14DQ9NXH3 145 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 K7EQM0 130 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 POP7O75817 140 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 SFTPDP35247 375 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 EXOSC2Q13868 293 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 TMEM244Q5VVB8 128 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 OR2T2Q6IF00 324 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 PIWIL3Q7Z3Z3 882 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 FAM122AQ96E09 287 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 CCDC74BQ96LY2 380 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 SORT1Q99523 831 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF442Q9H7R0 627 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 PLEKHA2Q9HB19 425 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 SNRNP200O75643 2136 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 AP4M1O00189 453 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 FOLR1P15328 257 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 OR2B8PP59922 312 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms