RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 SDR9C7Q8NEX9 313 aa12.41□□□□□ -0.42
COL2A1-201ENST00000337299 OR6T1Q8NGN1 323 aa12.41□□□□□ -0.42
COL2A1-201ENST00000337299 OR52I2Q8NH67 350 aa12.41□□□□□ -0.42
COL2A1-201ENST00000337299 C20orf24Q9BUV8 137 aa12.41□□□□□ -0.42
COL2A1-201ENST00000337299 SLC38A1Q9H2H9 487 aa12.41□□□□□ -0.42
COL2A1-201ENST00000337299 POMT2Q9UKY4 750 aa12.41□□□□□ -0.42
COL2A1-201ENST00000337299 SLC6A5Q9Y345 797 aa12.41□□□□□ -0.42
COL2A1-201ENST00000337299 TNRC6CQ9HCJ0 1690 aaKnown RBP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 MTMR11A4FU01 709 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ZNF860A6NHJ4 632 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 IGFBP4P22692 258 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 PBX2P40425 430 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ACTC1P68032 377 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ACTA1P68133 377 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ZNF674Q2M3X9 581 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 C14orf28Q4W4Y0 310 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 FIGNL1Q6PIW4 674 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 CHST9Q7L1S5 443 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ADGRG3Q86Y34 549 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 OR14A2Q96R54 314 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 SMIM3Q9BZL3 60 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 LAMP5Q9UJQ1 280 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 PCDHGA9Q9Y5G4 932 aaKnown RBP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ALPK2Q86TB3 2170 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 KIAA1551Q9HCM1 1747 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 IL1RNP18510 177 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 CERS1P27544 350 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 KIAA0907Q7Z7F0 614 aaPredicted RBP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 AMZ2Q86W34 360 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 VRK2Q86Y07 508 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 VRK3Q8IV63 474 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 SLC25A36Q96CQ1 311 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ORAI1Q96D31 301 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 PDLIM5Q96HC4 596 aaKnown RBP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 RAD9AQ99638 391 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 SLX1AQ9BQ83 275 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 GPR174Q9BXC1 333 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 OR52D1Q9H346 318 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 MVB12BQ9H7P6 319 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 CXorf36Q9H7Y0 433 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 SCML1Q9UN30 329 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 CA5BQ9Y2D0 317 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 WRBO00258 174 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 CDC123O75794 336 aaPredicted RBP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 C1QCP02747 245 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 GLULP15104 373 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 MTNR1BP49286 362 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 OR2B8PP59922 312 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 RPS27AP62979 156 aaKnown RBP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 UBA52P62987 128 aaKnown RBP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 RAB33AQ14088 237 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 FBXO42Q6P3S6 717 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 TTLL10Q6ZVT0 673 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 DCAF4L2Q8NA75 395 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 OR56A1Q8NGH5 318 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 MARC2Q969Z3 335 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ISG20Q96AZ6 181 aaKnown RBP12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ATF6BQ99941 703 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 SLC22A11Q9NSA0 550 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 MAN2C1Q9NTJ4 1040 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ASH2LQ9UBL3 628 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 MEMO1Q9Y316 297 aa12.4□□□□□ -0.42
COL2A1-201ENST00000337299 ANKRD61A6NGH8 418 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 ZNF593O00488 134 aaPredicted RBP12.4□□□□□ -0.43
COL2A1-201ENST00000337299 TSPAN15O95858 294 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 FABP1P07148 127 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 C8AP07357 584 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 PTHLHP12272 177 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 SQSTM1Q13501 440 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 PDZD11Q5EBL8 140 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 LCN10Q6JVE6 187 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 DPPA4Q7L190 304 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 OR14K1Q8NGZ2 314 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 KCTD12Q96CX2 325 aaKnown RBP12.4□□□□□ -0.43
COL2A1-201ENST00000337299 LURAP1Q96LR2 239 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 PRRC1Q96M27 445 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 ZNF578Q96N58 590 aaPredicted RBP12.4□□□□□ -0.43
COL2A1-201ENST00000337299 B3GAT2Q9NPZ5 323 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 NDOR1Q9UHB4 597 aa12.4□□□□□ -0.43
COL2A1-201ENST00000337299 ZNF223Q9UK11 482 aaPredicted RBP12.4□□□□□ -0.43
COL2A1-201ENST00000337299 SPTBP11277 2137 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 TRAV27A0A087WT01 109 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 NPIPA5A0A0B4J1W7 369 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 TEX13DA0A0J9YY54 714 aaPredicted RBP12.39□□□□□ -0.43
COL2A1-201ENST00000337299 NPIPA7E9PJI5 369 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 EIF1AYO14602 144 aaKnown RBP12.39□□□□□ -0.43
COL2A1-201ENST00000337299 SLC2A10O95528 541 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 HLA-AP01891 365 aaKnown RBP12.39□□□□□ -0.43
COL2A1-201ENST00000337299 NPIPA8P0DM63 369 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 PIPP12273 146 aaPredicted RBP12.39□□□□□ -0.43
COL2A1-201ENST00000337299 HOXD9P28356 352 aaPredicted RBP12.39□□□□□ -0.43
COL2A1-201ENST00000337299 EIF1AXP47813 144 aaKnown RBP12.39□□□□□ -0.43
COL2A1-201ENST00000337299 NNATQ16517 81 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 SLC6A19Q695T7 634 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 GPR139Q6DWJ6 353 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 CALHM3Q86XJ0 350 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 MMP21Q8N119 569 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 TMEM41AQ96HV5 264 aa12.39□□□□□ -0.43
COL2A1-201ENST00000337299 TCEAL7Q9BRU2 100 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms