RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SUOXP51687 545 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ZNF33BQ06732 778 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ZNF616Q08AN1 781 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 LRIF1Q5T3J3 769 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 GLT8D1Q68CQ7 371 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ADIPOR2Q86V24 386 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 MFSD8Q8NHS3 518 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 PRRC1Q96M27 445 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 SFXN2Q96NB2 322 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 EIF5A2Q9GZV4 153 aaKnown RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 DPEP2Q9H4A9 486 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 POLMQ9NP87 494 aaPredicted RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 PLCXD1Q9NUJ7 323 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 GRHPRQ9UBQ7 328 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 MRTO4Q9UKD2 239 aaKnown RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 TXNL1O43396 289 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 GMDSO60547 372 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 RAD1O60671 282 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 M6PRP20645 277 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 KIR2DL3P43628 341 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 IFITM3Q01628 133 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 GAB1Q13480 694 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 C3orf38Q5JPI3 329 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 TMEM205Q6UW68 189 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 ZNF546Q86UE3 836 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 METTL21AQ8WXB1 218 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 TAS2R8Q9NYW2 309 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 DIMT1Q9UNQ2 313 aaKnown RBP14.37□□□□□ -0.11
SHH-201ENST00000297261 CASP8AP2Q9UKL3 1982 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 FZD6O60353 706 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 CDC40O60508 579 aaKnown RBP eCLIP14.37□□□□□ -0.11
SHH-201ENST00000297261 ZNF20P17024 532 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 CXCR1P25024 350 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 LSSP48449 732 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 RPS21P63220 83 aaKnown RBP14.37□□□□□ -0.11
SHH-201ENST00000297261 SORDQ00796 357 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 ASTLQ6HA08 431 aaPredicted RBP14.37□□□□□ -0.11
SHH-201ENST00000297261 ZNF852Q6ZMS4 543 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 BRIX1Q8TDN6 353 aaKnown RBP14.37□□□□□ -0.11
SHH-201ENST00000297261 ST8SIA4Q92187 359 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 NXPE3Q969Y0 559 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 MACROD1Q9BQ69 325 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 PRR14Q9BWN1 585 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 LRRC37A2A6NM11 1700 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 SLC9B1P1A6NJY1 282 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 M0R082 166 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 LATO43561 262 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 NTSR1P30989 418 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 FAM69AQ5T7M9 428 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 P2RY12Q9H244 342 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 NAP1L6A6NFF2 107 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 C11orf98E9PRG8 122 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 ACOT7O00154 380 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 SPARCP09486 303 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 PBX2P40425 430 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 SIM1P81133 766 aaPredicted RBP14.37□□□□□ -0.11
SHH-201ENST00000297261 UBXN2BQ14CS0 331 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 HBMQ6B0K9 141 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 RPL13AP3Q6NVV1 102 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 FCRLAQ7L513 359 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 ST8SIA2Q92186 375 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 SMPDL3BQ92485 455 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 TCEAL3Q969E4 200 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 SRRQ9GZT4 340 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 OR51B4Q9Y5P0 310 aa14.37□□□□□ -0.11
SHH-201ENST00000297261 PRICKLE3O43900 615 aaPredicted RBP14.36□□□□□ -0.11
SHH-201ENST00000297261 PRAMEF2O60811 474 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 B4GALT2O60909 372 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 C5AR1P21730 350 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 IGFALSP35858 605 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 CHAF1BQ13112 559 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 HTR4Q13639 388 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ZNF169Q14929 603 aaPredicted RBP14.36□□□□□ -0.11
SHH-201ENST00000297261 ABCA11PQ4W5N1 156 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 GSG1LQ6UXU4 331 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 RBM45Q8IUH3 476 aaKnown RBP14.36□□□□□ -0.11
SHH-201ENST00000297261 GRAMD2AQ8IUY3 354 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ADGRF3Q8IZF5 1079 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 RASGEF1AQ8N9B8 481 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ZNF480Q8WV37 535 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ADAMTS14Q8WXS8 1223 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ARL11Q969Q4 196 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 HS6ST2Q96MM7 605 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ASB16Q96NS5 453 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 OR2A14Q96R47 310 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 OR52D1Q9H346 318 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 TRAPPC13A5PLN9 417 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 RNGTTO60942 597 aaKnown RBP14.36□□□□□ -0.11
SHH-201ENST00000297261 RAB3DO95716 219 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 PGGHGQ32M88 737 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 IDO2Q6ZQW0 420 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ZBTB44Q8NCP5 570 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ZNF740Q8NDX6 193 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 SYNPRQ8TBG9 265 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ACOT11Q8WXI4 607 aaPredicted RBP14.36□□□□□ -0.11
SHH-201ENST00000297261 KIAA1143Q96AT1 154 aaPredicted RBP14.36□□□□□ -0.11
SHH-201ENST00000297261 ARRDC3Q96B67 414 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 CDCA4Q9BXL8 241 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 EVA1BQ9NVM1 165 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 C1orf226A1L170 272 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms