RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TRAPPC13A5PLN9 417 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF879B4DU55 563 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 FAM227AF5H4B4 570 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 FFAR1O14842 300 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 TNFSF14O43557 240 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 PRAF2O60831 178 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 BPNT1O95861 308 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ECDO95905 644 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 PCCBP05166 539 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SLC35G6P0C7Q6 338 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ARSBP15848 533 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ACADLP28330 430 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OPRD1P41143 372 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 FRKP42685 505 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 AVPR1BP47901 424 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CLCNKAP51800 687 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 GBX2P52951 348 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SLAMF1Q13291 335 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 DHCR24Q15392 516 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF79Q15937 498 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 HNRNPA1L2Q32P51 320 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 LHFPL3Q86UP9 236 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 C2orf73Q8N5S3 287 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 LILRA3Q8N6C8 439 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 POGLUT1Q8NBL1 392 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OR5M3Q8NGP4 307 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SLC2A12Q8TD20 617 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SLC22A18Q96BI1 424 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OMA1Q96E52 524 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SLC41A3Q96GZ6 507 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CITED4Q96RK1 184 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SDHCQ99643 169 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SORBS1Q9BX66 1292 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 C1QTNF2Q9BXJ5 285 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ABCG5Q9H222 651 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OR52A5Q9H2C5 316 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 GLIPR2Q9H4G4 154 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 EQTNQ9NQ60 294 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 UCKL1Q9NWZ5 548 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 BABAM2Q9NXR7 383 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ABRACLQ9P1F3 81 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 MBD1Q9UIS9 605 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 NDRG2Q9UN36 371 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 WDR45Q9Y484 360 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CACNG2Q9Y698 323 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 WNT6Q9Y6F9 365 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 NAP1L6A6NFF2 107 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 C4orf47A7E2U8 309 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 WWP2O00308 870 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 RNF13O43567 381 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF780AO75290 641 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CRYZL1O95825 349 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SOD1P00441 154 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 HMGN2P05204 90 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 DBIP07108 87 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 RHOP08100 348 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CHRM5P08912 532 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CLEC2LP0C7M8 214 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 HK1P19367 917 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 PRKACBP22694 351 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SLC6A6P31641 620 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 FAUP35544 74 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ACTA2P62736 377 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ACTG2P63267 376 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 PRDX1Q06830 199 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 EIF3IQ13347 325 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 TNK1Q13470 666 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZNHIT3Q15649 155 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF77Q15935 545 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 NTRK2Q16620 822 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OR2G6Q5TZ20 316 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ACSM5Q6NUN0 579 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 MEPCEQ7L2J0 689 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 FGD2Q7Z6J4 655 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 KLBQ86Z14 1044 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 UBE2J2Q8N2K1 259 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SAMD12Q8N8I0 201 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 KCT2Q8NC54 265 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OR2L5Q8NG80 312 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 HAVCR2Q8TDQ0 301 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SPRYD4Q8WW59 207 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 FAM46AQ96IP4 442 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 RADILQ96JH8 1075 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 TM9SF2Q99805 663 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ARHGDIGQ99819 225 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 TIMM29Q9BSF4 260 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 IFT27Q9BW83 186 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 JAM3Q9BX67 310 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 HDHD5Q9BXW7 423 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 MIXL1Q9H2W2 232 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZC4H2Q9NQZ6 224 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ACOXLQ9NUZ1 547 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 IMP3Q9NV31 184 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 MCUBQ9NWR8 336 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 PLAGL1Q9UM63 463 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZFR2Q9UPR6 939 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 EXOGQ9Y2C4 368 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 MED31Q9Y3C7 131 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 NUP214P35658 2090 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 WASHC1A8K0Z3 465 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms