RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 EFCAB1Q9HAE3 211 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 TINAGQ9UJW2 476 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 ANGPT4Q9Y264 503 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 MRPS18CQ9Y3D5 142 aaKnown RBP16.4■□□□□ 0.22
CLN3-239ENST00000628023 FREM3P0C091 2139 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 LRBAP50851 2863 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 A0A087WZY1 265 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 FIGNL2A6NMB9 653 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 OIP5O43482 229 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 EIF4E2O60573 245 aaKnown RBP16.39■□□□□ 0.21
CLN3-239ENST00000628023 ESRRAP11474 423 aaPredicted RBP16.39■□□□□ 0.21
CLN3-239ENST00000628023 SUMO3P55854 103 aaPredicted RBP16.39■□□□□ 0.21
CLN3-239ENST00000628023 KCNJ10P78508 379 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 CBFBQ13951 182 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 RABL3Q5HYI8 236 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 PRAMEF8Q5VWM4 474 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 PRAMEF7Q5VXH5 474 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 REEP3Q6NUK4 255 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 ZNF585AQ6P3V2 769 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 CBLN3Q6UW01 205 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 ARSKQ6UWY0 536 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 Q6ZPB1 254 aaPredicted RBP16.39■□□□□ 0.21
CLN3-239ENST00000628023 MRGPRGQ86SM5 289 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 EID3Q8N140 333 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 ZNF808Q8N4W9 903 aaPredicted RBP16.39■□□□□ 0.21
CLN3-239ENST00000628023 METTL25Q8N6Q8 603 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 C11orf65Q8NCR3 313 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 TOR1AIP2Q8NFQ8 470 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 OR52P1PQ8NH57 321 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 OR10A6Q8NH74 314 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 PIGQQ9BRB3 760 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 PIF1Q9H611 641 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 KAT8Q9H7Z6 458 aaKnown RBP16.39■□□□□ 0.21
CLN3-239ENST00000628023 CHST11Q9NPF2 352 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 MED17Q9NVC6 651 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 ALKBH4Q9NXW9 302 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 ZNF835Q9Y2P0 537 aa16.39■□□□□ 0.21
CLN3-239ENST00000628023 CLDN24A6NM45 220 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 ZIC3O60481 467 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 PGM3O95394 542 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 ACTL6AO96019 429 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 NID1P14543 1247 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 BMP7P18075 431 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 RPS4Y1P22090 263 aaKnown RBP16.38■□□□□ 0.21
CLN3-239ENST00000628023 ADH7P40394 386 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 SKP2Q13309 424 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 LARS2Q15031 903 aaKnown RBP16.38■□□□□ 0.21
CLN3-239ENST00000628023 ENPP6Q6UWR7 440 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 ARPINQ7Z6K5 226 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 SERPINA11Q86U17 422 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 KRT73Q86Y46 540 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 CMIPQ8IY22 773 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 HIPK4Q8NE63 616 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 OR5M1Q8NGP8 315 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 OR5W2Q8NH69 310 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 BCAS4Q8TDM0 211 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 ITLN2Q8WWU7 325 aaPredicted RBP16.38■□□□□ 0.21
CLN3-239ENST00000628023 CCDC120Q96HB5 630 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 SPATA9Q9BWV2 254 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 UGT2B28Q9BY64 529 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 LAT2Q9GZY6 243 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 TP63Q9H3D4 680 aaPredicted RBP16.38■□□□□ 0.21
CLN3-239ENST00000628023 ARMC7Q9H6L4 198 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 BCL2L10Q9HD36 194 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 PNPLA3Q9NST1 481 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 ZNF232Q9UNY5 417 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 CAMK2AQ9UQM7 478 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 ZNF443Q9Y2A4 671 aaPredicted RBP16.38■□□□□ 0.21
CLN3-239ENST00000628023 DSPPQ9NZW4 1301 aa16.38■□□□□ 0.21
CLN3-239ENST00000628023 GTF3C1Q12789 2109 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 AQP1P29972 269 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 PGM1P36871 562 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 CPA2P48052 419 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 SMSP52788 366 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 CRYZQ08257 329 aaKnown RBP16.37■□□□□ 0.21
CLN3-239ENST00000628023 RBBP4Q09028 425 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 PLPPR5Q32ZL2 321 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 GXYLT1Q4G148 440 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 NHSL2Q5HYW2 709 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 MRPL2Q5T653 305 aaKnown RBP16.37■□□□□ 0.21
CLN3-239ENST00000628023 AP1ARQ63HQ0 302 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 XKRXQ6PP77 449 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 C3P1Q6ZMU1 363 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 ZNF836Q6ZNA1 936 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 VRK2Q86Y07 508 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 SLC30A8Q8IWU4 369 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 MCEMP1Q8IX19 187 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 PM20D2Q8IYS1 436 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 ZBTB8AQ96BR9 441 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 ZNF607Q96SK3 696 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 SPATA5L1Q9BVQ7 753 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 ICAM5Q9UMF0 924 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 IFT52Q9Y366 437 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 ABCA12Q86UK0 2595 aa16.37■□□□□ 0.21
CLN3-239ENST00000628023 SHISA8B8ZZ34 492 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 H3BML4 177 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 THBS1P07996 1170 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 ETS2P15036 469 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 ZNF17P17021 662 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 POU3F2P20265 443 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms