RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SEMA7AO75326 666 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 BCAS1O75363 584 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-220ENST00000627371 THBS1P07996 1170 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF17P17021 662 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 SLC6A2P23975 617 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 PLAURQ03405 335 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 RBBP4Q09028 425 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 TMEM44Q2T9K0 475 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 LIN52Q52LA3 116 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 RABL3Q5HYI8 236 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 ENPP6Q6UWR7 440 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 PTOV1Q86YD1 416 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 EID3Q8N140 333 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 FAM26EQ8N5C1 309 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 C11orf65Q8NCR3 313 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 OR5W2Q8NH69 310 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 OR10A6Q8NH74 314 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 ZBTB8AQ96BR9 441 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 SPATA9Q9BWV2 254 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 PRDM14Q9GZV8 571 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 EFCAB1Q9HAE3 211 aa18.38■□□□□ 0.53
PTCD3-220ENST00000627371 EXOSC3Q9NQT5 275 aaKnown RBP18.38■□□□□ 0.53
PTCD3-220ENST00000627371 OR2M5A3KFT3 312 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 LINC01387J3KSC0 135 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 CCL21O00585 134 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 DNAJA2O60884 412 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 WDR1O75083 606 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 CYP7B1O75881 506 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 NUDT14O95848 222 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 LINGO3P0C6S8 592 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 ETS2P15036 469 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 GZMMP51124 257 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 CCR4P51679 360 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 CBFBQ13951 182 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 MRPL2Q5T653 305 aaKnown RBP18.37■□□□□ 0.53
PTCD3-220ENST00000627371 FAM91A1Q658Y4 838 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 HACD2Q6Y1H2 254 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 ARPINQ7Z6K5 226 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 VRK2Q86Y07 508 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 PM20D2Q8IYS1 436 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 GTPBP8Q8N3Z3 284 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-220ENST00000627371 CCDC197Q8NCU1 140 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 HIPK4Q8NE63 616 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 GPR119Q8TDV5 335 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 CACYBPQ9HB71 228 aaKnown RBP18.37■□□□□ 0.53
PTCD3-220ENST00000627371 ANGPT4Q9Y264 503 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF443Q9Y2A4 671 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-220ENST00000627371 MEMO1Q9Y316 297 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 IFT52Q9Y366 437 aa18.37■□□□□ 0.53
PTCD3-220ENST00000627371 E9PLN8 166 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 AGFG2O95081 481 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 PABPC4LP0CB38 370 aaKnown RBP18.36■□□□□ 0.53
PTCD3-220ENST00000627371 GABRA1P14867 456 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 LHX2P50458 406 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 NUDT2P50583 147 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 EEF1A1P68104 462 aaKnown RBP18.36■□□□□ 0.53
PTCD3-220ENST00000627371 LARS2Q15031 903 aaKnown RBP18.36■□□□□ 0.53
PTCD3-220ENST00000627371 RNF220Q5VTB9 566 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF585AQ6P3V2 769 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 C3P1Q6ZMU1 363 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF836Q6ZNA1 936 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 CALHM3Q86XJ0 350 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 ZZZ3Q8IYH5 903 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 OR5M1Q8NGP8 315 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 WDYHV1Q96HA8 205 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 ECSITQ9BQ95 431 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 VKORC1Q9BQB6 163 aa18.36■□□□□ 0.53
PTCD3-220ENST00000627371 GPATCH1Q9BRR8 931 aaKnown RBP18.36■□□□□ 0.53
PTCD3-220ENST00000627371 DNAJB12Q9NXW2 375 aaKnown RBP18.36■□□□□ 0.53
PTCD3-220ENST00000627371 GPC6Q9Y625 555 aaPredicted RBP18.36■□□□□ 0.53
PTCD3-220ENST00000627371 CDHR4A6H8M9 788 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 SHISA8B8ZZ34 492 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 ESRRAP11474 423 aaPredicted RBP18.35■□□□□ 0.53
PTCD3-220ENST00000627371 CPN1P15169 458 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF708P17019 499 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 ACVR2AP27037 513 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 PCGF2P35227 344 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 EIF1P41567 113 aaKnown RBP18.35■□□□□ 0.53
PTCD3-220ENST00000627371 PER3P56645 1201 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 PCBP3P57721 371 aaKnown RBP18.35■□□□□ 0.53
PTCD3-220ENST00000627371 ART3Q13508 389 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 TOMM34Q15785 309 aaPredicted RBP18.35■□□□□ 0.53
PTCD3-220ENST00000627371 ZSWIM7Q19AV6 140 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 C8orf82Q6P1X6 216 aaPredicted RBP18.35■□□□□ 0.53
PTCD3-220ENST00000627371 KRT73Q86Y46 540 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 SLC30A8Q8IWU4 369 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 ULK2Q8IYT8 1036 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 POC1BQ8TC44 478 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 CNOT9Q92600 299 aaKnown RBP18.35■□□□□ 0.53
PTCD3-220ENST00000627371 RNF145Q96MT1 663 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 DMRTA2Q96SC8 542 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 NPAS1Q99742 590 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 HOPXQ9BPY8 73 aaPredicted RBP18.35■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF232Q9UNY5 417 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 CAMK2AQ9UQM7 478 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF337Q9Y3M9 751 aa18.35■□□□□ 0.53
PTCD3-220ENST00000627371 LRRK2Q5S007 2527 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 KIAA1549Q9HCM3 1950 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 AHRRA9YTQ3 701 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 ETV2O00321 342 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms