RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ZSCAN4Q8NAM6 433 aaPredicted RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 DUSP18Q8NEJ0 188 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 OR2T33Q8NG76 320 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 DNAJA4Q8WW22 397 aaPredicted RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 LINC00477Q96M19 166 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 TSNARE1Q96NA8 513 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 SIRPDQ9H106 197 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 ZDHHC11Q9H8X9 412 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 PRMT8Q9NR22 394 aaPredicted RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 DCDC2Q9UHG0 476 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 BTNL2Q9UIR0 455 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 EIF3LQ9Y262 564 aaKnown RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 THSD7BQ9C0I4 1608 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 DHX29Q7Z478 1369 aaKnown RBP1.24□□□□□ -2.21
SCN1A-208ENST00000625916 SPAG7O75391 227 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 AKR7A3O95154 331 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 NDUFA7O95182 113 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 DCNP07585 359 aaKnown RBP1.24□□□□□ -2.21
SCN1A-208ENST00000625916 RETP07949 1114 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 ABHD2P08910 425 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 BCKDHAP12694 445 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 PTPN6P29350 595 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 EPHX2P34913 555 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 MTTPP55157 894 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 LIM2P55344 173 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 OSTNP61366 133 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 SLC10A7Q0GE19 358 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 C17orf67Q0P5P2 114 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 WASHC5Q12768 1159 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 RPA4Q13156 261 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 ARFRP1Q13795 201 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 TFDP1Q14186 410 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 NSDHLQ15738 373 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 KRTAP13-2Q52LG2 175 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 FAM120AOSQ5T036 256 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 FAM159AQ6UWV7 190 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 FAM220AQ7Z4H9 259 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 HSD11B1LQ7Z5J1 315 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 ANKRD23Q86SG2 305 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 BATF2Q8N1L9 274 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 CCNYQ8ND76 341 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 ZNF740Q8NDX6 193 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 EXOC6Q8TAG9 804 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 OR1E3Q8WZA6 343 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 STARD8Q92502 1023 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 ADIPOR1Q96A54 375 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 SLC25A36Q96CQ1 311 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 VMP1Q96GC9 406 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 SPATA13Q96N96 652 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 ARHGDIGQ99819 225 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 WRAP53Q9BUR4 548 aaKnown RBP1.24□□□□□ -2.21
SCN1A-208ENST00000625916 TBC1D10AQ9BXI6 508 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 POLR2J2Q9GZM3 115 aaKnown RBP1.24□□□□□ -2.21
SCN1A-208ENST00000625916 COMMD4Q9H0A8 199 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 POLR2J3Q9H1A7 115 aaKnown RBP1.24□□□□□ -2.21
SCN1A-208ENST00000625916 RPAP3Q9H6T3 665 aaPredicted RBP1.24□□□□□ -2.21
SCN1A-208ENST00000625916 TRPV5Q9NQA5 729 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 PAK1IP1Q9NWT1 392 aaPredicted RBP1.24□□□□□ -2.21
SCN1A-208ENST00000625916 C1orf123Q9NWV4 160 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 TRIM10Q9UDY6 481 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 MARCOQ9UEW3 520 aaPredicted RBP1.24□□□□□ -2.21
SCN1A-208ENST00000625916 CRLS1Q9UJA2 301 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 FBN3Q75N90 2809 aa1.24□□□□□ -2.21
SCN1A-208ENST00000625916 RPGRIP1LQ68CZ1 1315 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 IGHV3-64DA0A0J9YX35 117 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 WASHC1A8K0Z3 465 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 E9PMD0 336 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 K7N7A8 449 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 SGK494L7N484 410 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 KINO60870 393 aaKnown RBP1.23□□□□□ -2.21
SCN1A-208ENST00000625916 SNAPINO95295 136 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 PNPP00491 289 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 SLC4A1P02730 911 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 ZCCHC18P0CG32 403 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 CELP19835 753 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 SERPINA2P20848 420 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 ATP5A1P25705 553 aaKnown RBP1.23□□□□□ -2.21
SCN1A-208ENST00000625916 AQP1P29972 269 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 DLSTP36957 453 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 ACTA2P62736 377 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 ACTC1P68032 377 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 CSNK1G2P78368 415 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 BDH1Q02338 343 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 ST3GAL3Q11203 375 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 ABCA11PQ4W5N1 156 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 PVRIGQ6DKI7 326 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 ETFRF1Q6IPR1 90 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 WDR74Q6RFH5 385 aaPredicted RBP1.23□□□□□ -2.21
SCN1A-208ENST00000625916 CYS1Q717R9 158 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 ARCQ7LC44 396 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 TAF8Q7Z7C8 310 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 VRK2Q86Y07 508 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 CNTN4Q8IWV2 1026 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 C6orf223Q8N319 242 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 OR52I1Q8NGK6 324 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 KRT35Q92764 455 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 UCN3Q969E3 161 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 RMI2Q96E14 147 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 SDSLQ96GA7 329 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 MS4A14Q96JA4 679 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms