RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 DVL2O14641 736 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 CSF2RAP15509 400 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 FAUP35544 74 aaKnown RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 CCR2P41597 374 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 ACTR1BP42025 376 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 GDI2P50395 445 aaKnown RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 ACTR1AP61163 376 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 PRDX1Q06830 199 aaKnown RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 BIKQ13323 160 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 LRRC37A5PQ49AS3 106 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 CCSAPQ6IQ19 270 aaPredicted RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 ALKAL2Q6UX46 152 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 MS4A15Q8N5U1 240 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 SIRT6Q8N6T7 355 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 TSEN15Q8WW01 171 aaKnown RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 FCAMRQ8WWV6 532 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 BPIFA2Q96DR5 249 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 OR2M2Q96R28 347 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 C1QTNF2Q9BXJ5 285 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 SIDT1Q9NXL6 827 aaKnown RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 KCND3Q9UK17 655 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 A0A1W2PR48 441 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 SERTM1A2A2V5 107 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 B8ZZF3 427 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 NFATC1O95644 943 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 NUP62P37198 522 aaPredicted RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 VEGFCP49767 419 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 CSNK1G2P78368 415 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 NOGQ13253 232 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 SLC25A35Q3KQZ1 300 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 TIGD3Q6B0B8 471 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 CNKSR3Q6P9H4 555 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 GALNT6Q8NCL4 622 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 WFIKKN2Q8TEU8 576 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 NKD1Q969G9 470 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 DDOQ99489 341 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 RSPH9Q9H1X1 276 aaPredicted RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 SYNPO2LQ9H987 977 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 FGF20Q9NP95 211 aaPredicted RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 COMMD9Q9P000 198 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 MED11Q9P086 117 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 TET1Q8NFU7 2136 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 A0A1W2PP55 124 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 TMEM229AB2RXF0 380 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 PLATP00750 562 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 POU3F3P20264 500 aaPredicted RBP11.75□□□□□ -0.53
LIG1-221ENST00000613670 AHCYP23526 432 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 SLC6A6P31641 620 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 GDNFP39905 211 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 MTNR1BP49286 362 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 PGDP52209 483 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 C21orf58P58505 322 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 E2F1Q01094 437 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 TMEM35AQ53FP2 167 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 TMEM215Q68D42 235 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 DGLUCYQ7Z3D6 616 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 JAZF1Q86VZ6 243 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 GATSQ8NAP1 163 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 GPR174Q9BXC1 333 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 ASB6Q9NWX5 421 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 A0A1W2PS29 197 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 MEIS3P1A6NDR6 274 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 LANCL1O43813 399 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 CLEC3AO75596 197 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 FBXO45P0C2W1 286 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 PXNP49023 591 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 CDK5Q00535 292 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 SLC22A10Q63ZE4 541 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 GET4Q7L5D6 327 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 TMPRSS12Q86WS5 348 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 ARL14Q8N4G2 192 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 LSM14AQ8ND56 463 aaKnown RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 OR52N1Q8NH53 320 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 OR5K2Q8NHB8 316 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 MOSPD2Q8NHP6 518 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 PFN4Q8NHR9 129 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 NR4A3Q92570 626 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 ADAD1Q96M93 576 aaKnown RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 INSM2Q96T92 566 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 SEC22CQ9BRL7 303 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 MED18Q9BUE0 208 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 COLEC10Q9Y6Z7 277 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 A0A0B4J293 547 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 LDB3O75112 727 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 CDC123O75794 336 aaPredicted RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 KRT33AO76009 404 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 CLUP10909 449 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 RBMS1P29558 406 aaKnown RBP11.74□□□□□ -0.53
LIG1-221ENST00000613670 C2orf27AQ580R0 203 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 LIN54Q6MZP7 749 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 SPERTQ8NA61 448 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 LGALS14Q8TCE9 139 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 PMEPA1Q969W9 287 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 MOAP1Q96BY2 351 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 RNF31Q96EP0 1072 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 PDCD1LG2Q9BQ51 273 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 MARVELD1Q9BSK0 173 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 CD93Q9NPY3 652 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 COPZ2Q9P299 210 aa11.74□□□□□ -0.53
LIG1-221ENST00000613670 KCNN3Q9UGI6 736 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms