RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320	PRG2	P13727	222 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TCEA1	P23193	301 aa	Known RBP	18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	MSX1	P28360	303 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	CCR4	P51679	360 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	FOXK1	P85037	733 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TOMM34	Q15785	309 aa	Predicted RBP	18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	CMPK2	Q5EBM0	449 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	FAM180A	Q6UWF9	173 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	CBLL1	Q75N03	491 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	OR4D11	Q8NGI4	311 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	OR5W2	Q8NH69	310 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	C1GALT1C1	Q96EU7	318 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	NPAS1	Q99742	590 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ZDHHC11	Q9H8X9	412 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	GORASP2	Q9H8Y8	452 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ASF1B	Q9NVP2	202 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	B4GALT7	Q9UBV7	327 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	NPIPA1	Q9UND3	350 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	LIPG	Q9Y5X9	500 aa		18.18	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TTLL8	A6PVC2	850 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320		M0R3H8	397 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SYT5	O00445	386 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TFEC	O14948	347 aa	Predicted RBP	18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ZIC3	O60481	467 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TRAPPC6A	O75865	159 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	WISP1	O95388	367 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	LGI1	O95970	557 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	IFNA14	P01570	189 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	CRYAB	P02511	175 aa	Known RBP	18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	FES	P07332	822 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TNFRSF1B	P20333	461 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	DPP4	P27487	766 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SRD5A2	P31213	254 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	RYK	P34925	604 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ACAA2	P42765	397 aa	Known RBP	18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	MLLT10	P55197	1068 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SUMO3	P55854	103 aa	Predicted RBP	18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	HOXC5	Q00444	222 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	EPS8	Q12929	822 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TRIM25	Q14258	630 aa	Known RBP	18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TOMM20	Q15388	145 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ZSWIM7	Q19AV6	140 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	EIPR1	Q53HC9	387 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	YRDC	Q86U90	279 aa	Known RBP	18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	LSR	Q86X29	649 aa	Predicted RBP	18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	LACC1	Q8IV20	430 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TOR1AIP2	Q8NFQ8	470 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	GPR119	Q8TDV5	335 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	MCUR1	Q96AQ8	359 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ARHGDIG	Q99819	225 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	OR2B2	Q9GZK3	357 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SLC6A15	Q9H2J7	730 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	HHATL	Q9HCP6	504 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	MED17	Q9NVC6	651 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	QPCTL	Q9NXS2	382 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ACTR3B	Q9P1U1	418 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SLC7A8	Q9UHI5	535 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	DKKL1	Q9UK85	242 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	BSN	Q9UPA5	3926 aa		18.17	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SHISA8	B8ZZ34	492 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ACOT8	O14734	319 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	C1QL1	O75973	258 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	HPN	P05981	417 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ZNF136	P52737	540 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	DSCR4	P56555	118 aa	Predicted RBP	18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SELENOW	P63302	87 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	NRF1	Q16656	503 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ZSCAN26	Q16670	478 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	WIPI1	Q5MNZ9	446 aa	Predicted RBP	18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	CYP2R1	Q6VVX0	501 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	VTCN1	Q7Z7D3	282 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SPPL2C	Q8IUH8	684 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	FAM86B1	Q8N7N1	296 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	FAM83F	Q8NEG4	500 aa	Predicted RBP	18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	FAR1	Q8WVX9	515 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	NR4A3	Q92570	626 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	UTP4	Q969X6	686 aa	Known RBP	18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ASB9	Q96DX5	294 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TPD52L3	Q96J77	140 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	NSMCE2	Q96MF7	247 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	PRR14	Q9BWN1	585 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	PTGES2	Q9H7Z7	377 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	DCAF13	Q9NV06	445 aa	Known RBP	18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	VDAC3	Q9Y277	283 aa		18.16	■□□□□ 0.5
SHKBP1-222	ENST00000600320	CFAP73	A6NFT4	308 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TPST2	O60704	377 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	GMNN	O75496	209 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ZNF682	O95780	498 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	NUDT14	O95848	222 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	C8B	P07358	591 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	FREM3	P0C091	2139 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	LINGO3	P0C6S8	592 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	HK1	P19367	917 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	TDGF1P3	P51864	188 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	CBFB	Q13951	182 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	ELOA	Q14241	798 aa	Known RBP	18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	SLC10A1	Q14973	349 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	QPRT	Q15274	297 aa		18.15	■□□□□ 0.5
SHKBP1-222	ENST00000600320	NPTX1	Q15818	432 aa		18.15	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms