RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 VRK2Q86Y07 508 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 FAM86B1Q8N7N1 296 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 RASSF5Q8WWW0 418 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ZFP64Q9NPA5 681 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ZNF232Q9UNY5 417 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 SAMD4AQ9UPU9 718 aaKnown RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 RRP15Q9Y3B9 282 aaKnown RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 DOCK7Q96N67 2140 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 INTS1Q8N201 2190 aaKnown RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 LRRK2Q5S007 2527 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 SCO2O43819 266 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ENTPD5O75356 428 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 OXSR1O95747 527 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 NID1P14543 1247 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 IL7RP16871 459 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 GNLYP22749 145 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 EVI2BP34910 448 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 MAGEA5P43359 124 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 KCNJ5P48544 419 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 RNF144AP50876 292 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 HSF1Q00613 529 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 LARS2Q15031 903 aaKnown RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 CMPK2Q5EBM0 449 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 SLC30A6Q6NXT4 461 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 VTCN1Q7Z7D3 282 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 WDSUB1Q8N9V3 476 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ZNF527Q8NB42 609 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 POGLUT1Q8NBL1 392 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 GPR32P1Q8NGA4 272 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 OIT3Q8WWZ8 545 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 LZICQ8WZA0 190 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 POP5Q969H6 163 aaKnown RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 PYURFQ96I23 114 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 TPD52L3Q96J77 140 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 OSBPL11Q9BXB4 747 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 PINK1Q9BXM7 581 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 CACYBPQ9HB71 228 aaKnown RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ZNF443Q9Y2A4 671 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 V9GYQ6 96 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 DHRS12A0PJE2 317 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 CLDN24A6NM45 220 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 TFECO14948 347 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-207ENST00000597136 SNX4O95219 450 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 FESP07332 822 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 PRKAR1BP31321 381 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 EEF1A1P68104 462 aaKnown RBP13.65□□□□□ -0.22
TRIM28-207ENST00000597136 RPP38P78345 283 aaKnown RBP13.65□□□□□ -0.22
TRIM28-207ENST00000597136 SNTA1Q13424 505 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 HYAL4Q2M3T9 481 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 GLIPR1L2Q4G1C9 344 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 LIN52Q52LA3 116 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 TBCELQ5QJ74 424 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 TIGD3Q6B0B8 471 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 DHRS4L2Q6PKH6 230 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 PACS2Q86VP3 889 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 COMTD1Q86VU5 262 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 ADGRG5Q8IZF4 528 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 CLIP4Q8N3C7 705 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 CANT1Q8WVQ1 401 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 RSRC1Q96IZ7 334 aaKnown RBP13.65□□□□□ -0.22
TRIM28-207ENST00000597136 HSH2DQ96JZ2 352 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 BAG5Q9UL15 447 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 CHST2Q9Y4C5 530 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 DTNAQ9Y4J8 743 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 LIPGQ9Y5X9 500 aa13.65□□□□□ -0.22
TRIM28-207ENST00000597136 H0YHG0 523 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 SCDO00767 359 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 EPPINO95925 133 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 GPIP06744 558 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 UMPSP11172 480 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 EDN3P14138 238 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 HPGDP15428 266 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 MASP1P48740 699 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 KCNJ10P78508 379 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 FGFBP1Q14512 234 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 EIF2S3LQ2VIR3 472 aaKnown RBP13.64□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF836Q6ZNA1 936 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 FKBP9P1Q75LS8 142 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 CHERPQ8IWX8 916 aaKnown RBP13.64□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF614Q8N883 585 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 GATSQ8NAP1 163 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 GALNT11Q8NCW6 608 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 DUSP19Q8WTR2 217 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 TMEM41AQ96HV5 264 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF597Q96LX8 424 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 GPR137Q96N19 417 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-207ENST00000597136 RLIMQ9NVW2 624 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 BOKQ9UMX3 212 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-207ENST00000597136 ABCG2Q9UNQ0 655 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 WIF1Q9Y5W5 379 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 CACNA1CQ13936 2221 aa13.64□□□□□ -0.23
TRIM28-207ENST00000597136 NCOA6Q14686 2063 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-207ENST00000597136 A0A1W2PQD3 144 aa13.63□□□□□ -0.23
TRIM28-207ENST00000597136 CDHR4A6H8M9 788 aa13.63□□□□□ -0.23
TRIM28-207ENST00000597136 SERINC4A6NH21 518 aa13.63□□□□□ -0.23
TRIM28-207ENST00000597136 ALG1L2C9J202 215 aa13.63□□□□□ -0.23
TRIM28-207ENST00000597136 SYT5O00445 386 aa13.63□□□□□ -0.23
TRIM28-207ENST00000597136 CDC40O60508 579 aaKnown RBP eCLIP13.63□□□□□ -0.23
TRIM28-207ENST00000597136 LGI1O95970 557 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms