RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 DHRS1Q96LJ7 313 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 DCBLD2Q96PD2 775 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 UTP23Q9BRU9 249 aaKnown RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 NMNAT1Q9HAN9 279 aaPredicted RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 SDHAF3Q9NRP4 125 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 CNIH4Q9P003 139 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 CNOT11Q9UKZ1 510 aaKnown RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 EML6Q6ZMW3 1958 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 CACNA1AO00555 2505 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 CDK2AP1O14519 115 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 LINGO3P0C6S8 592 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 CCL3P10147 92 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 UQCRBP14927 111 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 HOXD11P31277 338 aaPredicted RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 CCL11P51671 97 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 SMIM11AP58511 58 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 GK3PQ14409 553 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 OR1Q1Q15612 314 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 FGD3Q5JSP0 725 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 BROXQ5VW32 411 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 SLC22A10Q63ZE4 541 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 SLC30A6Q6NXT4 461 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 SHQ1Q6PI26 577 aaKnown RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 ZDHHC13Q8IUH4 622 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 APLFQ8IW19 511 aaPredicted RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 SVOPLQ8N434 492 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 CATSPER1Q8NEC5 780 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 TOR1AIP2Q8NFQ8 470 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 OR52J3Q8NH60 311 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 B4GALNT2Q8NHY0 566 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 DUSP19Q8WTR2 217 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 C9orf16Q9BUW7 83 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 TRIM2Q9C040 744 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 VCX3BQ9H321 246 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 TMEM27Q9HBJ8 222 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 HHATLQ9HCP6 504 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 ACER3Q9NUN7 267 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 PPP4R1LQ9P1A2 415 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 KCNMB2Q9Y691 235 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 TRAPPC13A5PLN9 417 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 C2orf72A6NCS6 295 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 G3V2T6 193 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 F10P00742 488 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 CAPNS1P04632 268 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 GCKP35557 465 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 VHLP40337 213 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 P2RX1P51575 399 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 ARHGDIAP52565 204 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 COPZ1P61923 177 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 ST3GAL3Q11203 375 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 TUBA3CQ13748 450 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 EXOC3L2Q2M3D2 409 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 TUBA3EQ6PEY2 450 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 ZNF613Q6PF04 617 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 MDGA2Q7Z553 956 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 TMEM179BQ7Z7N9 219 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 HIPK1Q86Z02 1210 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 LSMEM1Q8N8F7 131 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 OR4C15Q8NGM1 316 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 OR5W2Q8NH69 310 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 SLC41A3Q96GZ6 507 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 CPNE5Q9HCH3 593 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 LRFN1Q9P244 771 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 ICAM5Q9UMF0 924 aa13.38□□□□□ -0.27
VRK3-212ENST00000596814 A0A1W2PRQ8 180 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 PDLIM1O00151 329 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 FAAHO00519 579 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 GMFGO60234 142 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 WDPCPO95876 746 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 P04436 131 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 THRBP10828 461 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 FUT4P22083 530 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 ELAVL4P26378 380 aaKnown RBP13.37□□□□□ -0.27
VRK3-212ENST00000596814 ITPKBP27987 946 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 CD96P40200 585 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 LIMS1P48059 325 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 SUMO3P55854 103 aaPredicted RBP13.37□□□□□ -0.27
VRK3-212ENST00000596814 FOXD4Q12950 439 aaPredicted RBP13.37□□□□□ -0.27
VRK3-212ENST00000596814 MFAP5Q13361 173 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 CBFBQ13951 182 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 DGCR6Q14129 220 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 TRAM2Q15035 370 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 COL28A1Q2UY09 1125 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 ZBTB49Q6ZSB9 765 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 GDF7Q7Z4P5 450 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 STK32CQ86UX6 486 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 CADM2Q8N3J6 435 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 PSD4Q8NDX1 1056 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 FDCSPQ8NFU4 85 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 NRBF2Q96F24 287 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 ANGPTL4Q9BY76 406 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 KLHL4Q9C0H6 718 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 ANKRD19PQ9H560 264 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 ZNF552Q9H707 407 aaPredicted RBP13.37□□□□□ -0.27
VRK3-212ENST00000596814 TIMMDC1Q9NPL8 285 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 MAN2C1Q9NTJ4 1040 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 SACM1LQ9NTJ5 587 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 RPS6KB2Q9UBS0 482 aa13.37□□□□□ -0.27
VRK3-212ENST00000596814 IGLV3-32A0A0A0MS00 114 aa13.36□□□□□ -0.27
VRK3-212ENST00000596814 A0A0B4J2E0 115 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms