RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PRKD3O94806 890 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 NTN1O95631 604 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 DANCRP0C864 163 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 BCKDHAP12694 445 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 P2RX1P51575 399 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 SUMO3P55854 103 aaPredicted RBP18.73■□□□□ 0.59
VPS53-216ENST00000574029 LASP1Q14847 261 aaKnown RBP18.73■□□□□ 0.59
VPS53-216ENST00000574029 PCLAFQ15004 111 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 ETFDHQ16134 617 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 CLEC12BQ2HXU8 276 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 ALKBH2Q6NS38 261 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 LRIG3Q6UXM1 1119 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 FCRLAQ7L513 359 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 HSD17B8Q92506 261 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 FBXW5Q969U6 566 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 HOXD1Q9GZZ0 328 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 ESRP2Q9H6T0 727 aaKnown RBP18.73■□□□□ 0.59
VPS53-216ENST00000574029 COQ10BQ9H8M1 238 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 NGBQ9NPG2 151 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 GPC6Q9Y625 555 aaPredicted RBP18.73■□□□□ 0.59
VPS53-216ENST00000574029 TLN2Q9Y4G6 2542 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 CSPG4Q6UVK1 2322 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 CHEK2O96017 543 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 CD3EP07766 207 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 YES1P07947 543 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 SOD3P08294 240 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 FGF4P08620 206 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 NUDT17P0C025 328 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 DDX5P17844 614 aaKnown RBP18.72■□□□□ 0.59
VPS53-216ENST00000574029 ATP6V1C1P21283 382 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 IL32P24001 234 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 P2RY6Q15077 328 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 TMEM176BQ3YBM2 270 aaPredicted RBP18.72■□□□□ 0.59
VPS53-216ENST00000574029 GALNTL6Q49A17 601 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 CDC73Q6P1J9 531 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 SEZ6L2Q6UXD5 910 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 DNAJC14Q6Y2X3 702 aaPredicted RBP18.72■□□□□ 0.59
VPS53-216ENST00000574029 CXXC5Q7LFL8 322 aaKnown RBP18.72■□□□□ 0.59
VPS53-216ENST00000574029 HOMEZQ8IX15 550 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 ZNF527Q8NB42 609 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 SPATA3Q8NHX4 192 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 TRMT61AQ96FX7 289 aaKnown RBP18.72■□□□□ 0.59
VPS53-216ENST00000574029 CHMP6Q96FZ7 201 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 USB1Q9BQ65 265 aaKnown RBP18.72■□□□□ 0.59
VPS53-216ENST00000574029 MID2Q9UJV3 735 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 CARD8Q9Y2G2 431 aa18.72■□□□□ 0.59
VPS53-216ENST00000574029 CHD3Q12873 2000 aaKnown RBP18.72■□□□□ 0.59
VPS53-216ENST00000574029 NPIPA5A0A0B4J1W7 369 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 RNF223E7ERA6 249 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 NPIPA7E9PJI5 369 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 SCAMP2O15127 329 aaKnown RBP18.71■□□□□ 0.59
VPS53-216ENST00000574029 CLOCKO15516 846 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 NUDT14O95848 222 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 ADAP00813 363 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 NPIPA8P0DM63 369 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 PRKCAP17252 672 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 KRT4P19013 534 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 IDUAP35475 653 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 HPCAL1P37235 193 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 VEZF1Q14119 521 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 TOMM34Q15785 309 aaPredicted RBP18.71■□□□□ 0.59
VPS53-216ENST00000574029 UGT3A2Q3SY77 523 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.71■□□□□ 0.59
VPS53-216ENST00000574029 HEPHL1Q6MZM0 1159 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 SLC43A2Q8N370 569 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 MREGQ8N565 214 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 BANPQ8N9N5 519 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 OR7A2PQ8NGA2 310 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 PSMA8Q8TAA3 256 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 PIWIL2Q8TC59 973 aaKnown RBP18.71■□□□□ 0.59
VPS53-216ENST00000574029 GPR119Q8TDV5 335 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 ZFP90Q8TF47 636 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 SMAP2Q8WU79 429 aaPredicted RBP18.71■□□□□ 0.59
VPS53-216ENST00000574029 NEUROG1Q92886 237 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 KISS1RQ969F8 398 aaPredicted RBP18.71■□□□□ 0.59
VPS53-216ENST00000574029 ACTRT3Q9BYD9 372 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 FREM1Q5H8C1 2179 aa18.71■□□□□ 0.59
VPS53-216ENST00000574029 TMEM233B4DJY2 109 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 ZNF814B7Z6K7 855 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 NPIPB9F8W1W9 429 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 H3BNH8 94 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 TRIM13O60858 407 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 THBS1P07996 1170 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 LAMP1P11279 417 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 CR1P17927 2039 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 ENPP1P22413 925 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 RPL3P39023 403 aaKnown RBP18.7■□□□□ 0.58
VPS53-216ENST00000574029 CCT3P49368 545 aaKnown RBP18.7■□□□□ 0.58
VPS53-216ENST00000574029 RNF144AP50876 292 aaPredicted RBP18.7■□□□□ 0.58
VPS53-216ENST00000574029 ATP12AP54707 1039 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 DMTNQ08495 405 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 ITGADQ13349 1161 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 ZNF672Q499Z4 452 aaPredicted RBP18.7■□□□□ 0.58
VPS53-216ENST00000574029 SLC25A53Q5H9E4 307 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 DCST2Q5T1A1 773 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 ZNF619Q8N2I2 560 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 TWIST2Q8WVJ9 160 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 OR5P2Q8WZ92 322 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 ZNF524Q96C55 264 aa18.7■□□□□ 0.58
VPS53-216ENST00000574029 MRGPRX4Q96LA9 322 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms