RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CMIPQ8IY22 773 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 TEX19Q8NA77 164 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 SMYD1Q8NB12 490 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 OR52E4Q8NGH9 312 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 PHOSPHO1Q8TCT1 267 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 PHF10Q8WUB8 498 aaKnown RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 C1GALT1C1Q96EU7 318 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 SH3YL1Q96HL8 342 aaPredicted RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 KCTD14Q9BQ13 255 aaPredicted RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 PRR14Q9BWN1 585 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 LAT2Q9GZY6 243 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 TSPAN10Q9H1Z9 355 aaPredicted RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 EXOSC3Q9NQT5 275 aaKnown RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 NDE1Q9NXR1 346 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 SPRR3Q9UBC9 169 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 SLC7A8Q9UHI5 535 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 ANAPC2Q9UJX6 822 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 ANGPT4Q9Y264 503 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 A0A1B0GVC2 190 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 C7orf72A4D263 438 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ANKUB1A6NFN9 424 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 SHISA8B8ZZ34 492 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 C5orf58C9J3I9 102 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 SYT5O00445 386 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 FAAHO00519 579 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 SCDO00767 359 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 HCRTR2O43614 444 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 EIF4E2O60573 245 aaKnown RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 CBR3O75828 277 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 DNAJC8O75937 253 aaPredicted RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 RASAL1O95294 804 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 CSTAP01040 98 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 FESP07332 822 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 UBTFL6P0CB48 400 aaPredicted RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 GKN3PP0CG01 181 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 TCN1P20061 433 aaPredicted RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 IL11P20809 199 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ELAVL4P26378 380 aaKnown RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 SRD5A2P31213 254 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 P2RX1P51575 399 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 GFRA1P56159 465 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 CLDN15P56746 228 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 HPCAP84074 193 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 MXRA7P84157 204 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 HOXC5Q00444 222 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 HSF1Q00613 529 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 EPS8Q12929 822 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 PLPPR5Q32ZL2 321 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 LIN52Q52LA3 116 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 EIPR1Q53HC9 387 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 CYBRD1Q53TN4 286 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 SLC25A53Q5H9E4 307 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 EMC4Q5J8M3 183 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ZNF311Q5JNZ3 666 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 DCST1Q5T197 706 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 LCE2DQ5TA82 110 aaPredicted RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 LCN8Q6JVE9 175 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 CBLL1Q75N03 491 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 EIF3MQ7L2H7 374 aaKnown RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 VTCN1Q7Z7D3 282 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 PACS2Q86VP3 889 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ARMC8Q8IUR7 673 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 MISPQ8IVT2 679 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 SLC30A8Q8IWU4 369 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 PEX5LQ8IYB4 626 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ULK2Q8IYT8 1036 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ARHGAP24Q8N264 748 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ZNF614Q8N883 585 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ZNF527Q8NB42 609 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 FAM83FQ8NEG4 500 aaPredicted RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 TOR1AIP2Q8NFQ8 470 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 OR1J4Q8NGS1 313 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 B4GALNT2Q8NHY0 566 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 FAR1Q8WVX9 515 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 NR4A3Q92570 626 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 THTPAQ9BU02 230 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 PINK1Q9BXM7 581 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 SLC6A15Q9H2J7 730 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 OCEL1Q9H607 264 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 GORASP2Q9H8Y8 452 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ACKR4Q9NPB9 350 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 DCAF13Q9NV06 445 aaKnown RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 OLAHQ9NV23 265 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 MED17Q9NVC6 651 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 QPCTLQ9NXS2 382 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 PPP4R1LQ9P1A2 415 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 BOKQ9UMX3 212 aaPredicted RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 SLC35A3Q9Y2D2 325 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 MRPS18CQ9Y3D5 142 aaKnown RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 SNX13Q9Y5W8 968 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 PHF3Q92576 2039 aaKnown RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 DOCK7Q96N67 2140 aa8.42□□□□□ -1.06
VPS35-211ENST00000569950 FASNP49327 2511 aaKnown RBP8.42□□□□□ -1.06
VPS35-211ENST00000569950 NCOA6Q14686 2063 aaPredicted RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 M0R3H8 397 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 EBAG9O00559 213 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 GYG2O15488 501 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 GMFGO60234 142 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 PRSS23O95084 383 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms