RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 NXNQ6DKJ4 435 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 VWA1Q6PCB0 445 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 LILRA2Q8N149 483 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 TRIML2Q8N7C3 387 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 ZNF614Q8N883 585 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 CNEP1R1Q8N9A8 125 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 OR10D3Q8NH80 312 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 XAGE5Q8WWM1 108 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 ARSGQ96EG1 525 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 ATP6V1G3Q96LB4 118 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 SAP130Q9H0E3 1048 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 POLE3Q9NRF9 147 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 RASSF1Q9NS23 344 aa18.22■□□□□ 0.51
CLK3-225ENST00000569063 GPC6Q9Y625 555 aaPredicted RBP18.22■□□□□ 0.51
CLK3-225ENST00000569063 A0A0J9YW62 118 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 C9JVG2 144 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 SLC22A3O75751 556 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 AQP8O94778 261 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 NTN1O95631 604 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 CGAP01215 116 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 IL6P05231 212 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 UBL4AP11441 157 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 IL11P20809 199 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 KHKP50053 298 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 FOXF1Q12946 379 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 GSTA3Q16772 222 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 NDUFAF6Q330K2 333 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 TNFAIP8L2Q6P589 184 aaPredicted RBP18.21■□□□□ 0.51
CLK3-225ENST00000569063 BTLAQ7Z6A9 289 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 TOR1AIP2Q8NFQ8 470 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 OR5W2Q8NH69 310 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 OR2V1Q8NHB1 315 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 LINC01560Q8TB33 94 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 RAB8BQ92930 207 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 ROPN1LQ96C74 230 aa18.21■□□□□ 0.51
CLK3-225ENST00000569063 SDR39U1Q9NRG7 319 aaPredicted RBP18.21■□□□□ 0.51
CLK3-225ENST00000569063 DNAJB12Q9NXW2 375 aaKnown RBP18.21■□□□□ 0.51
CLK3-225ENST00000569063 ETV2O00321 342 aaPredicted RBP18.2■□□□□ 0.5
CLK3-225ENST00000569063 TNFSF11O14788 317 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 EFNA2O43921 213 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 KIAA0513O60268 411 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 DNAJA2O60884 412 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 SMNDC1O75940 238 aaKnown RBP eCLIP18.2■□□□□ 0.56e-7■■□□□ 13.7
CLK3-225ENST00000569063 OPN1LWP04000 364 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 CD8BP10966 210 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 PRKCAP17252 672 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 CDKN2CP42773 168 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 SLC6A8P48029 635 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 TXNL4AP83876 142 aaKnown RBP18.2■□□□□ 0.5
CLK3-225ENST00000569063 FUT5Q11128 374 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 CBFBQ13951 182 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 TOMM34Q15785 309 aaPredicted RBP18.2■□□□□ 0.5
CLK3-225ENST00000569063 SLC25A53Q5H9E4 307 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 PDSS1Q5T2R2 415 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 HBMQ6B0K9 141 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 TYW3Q6IPR3 259 aaKnown RBP18.2■□□□□ 0.5
CLK3-225ENST00000569063 FAM214BQ7L5A3 538 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 OLIG3Q7RTU3 272 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 FBXO27Q8NI29 283 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 ZNF524Q96C55 264 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 MRGPRX4Q96LA9 322 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 C7orf26Q96N11 449 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 DACH2Q96NX9 599 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 OR52B2Q96RD2 323 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 GPATCH1Q9BRR8 931 aaKnown RBP18.2■□□□□ 0.5
CLK3-225ENST00000569063 INPP5KQ9BT40 448 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 POLDIP3Q9BY77 421 aaKnown RBP18.2■□□□□ 0.5
CLK3-225ENST00000569063 PRRG4Q9BZD6 226 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 LAT2Q9GZY6 243 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 TMEM185BQ9H7F4 350 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 ZIM2Q9NZV7 527 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 MCTS1Q9ULC4 181 aaKnown RBP18.2■□□□□ 0.5
CLK3-225ENST00000569063 WDR45Q9Y484 360 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 USH1CQ9Y6N9 552 aa18.2■□□□□ 0.5
CLK3-225ENST00000569063 CENPVL1A0A0U1RR11 272 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 HMGN4O00479 90 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 CXCL13O43927 109 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 GOSR1O95249 250 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 C1QCP02747 245 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 SIRPAP78324 504 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 SKP2Q13309 424 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 MAPK14Q16539 360 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 TTMPQ5BVD1 217 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 EPGNQ6UW88 154 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 ZNF621Q6ZSS3 439 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 EIF3MQ7L2H7 374 aaKnown RBP18.19■□□□□ 0.5
CLK3-225ENST00000569063 RNF130Q86XS8 419 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 OSTF1Q92882 214 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 GMPPAQ96IJ6 420 aaPredicted RBP18.19■□□□□ 0.5
CLK3-225ENST00000569063 KLHL15Q96M94 604 aa18.19■□□□□ 0.5
CLK3-225ENST00000569063 CLEC4MQ9H2X3 399 aaPredicted RBP18.19■□□□□ 0.5
CLK3-225ENST00000569063 PRAMEF27A3QJZ7 478 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 GJE1A6NN92 205 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 UBDO15205 165 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 DIAPH2O60879 1101 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 SYNGR4O95473 234 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 CSTAP01040 98 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 SHC1P29353 583 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 CPOXP36551 454 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 CARD18P57730 90 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms