RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 AADACL4Q5VUY2 407 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 FAM111BQ6SJ93 734 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 MEPCEQ7L2J0 689 aaKnown RBP13.49□□□□□ -0.25
VPS35-210ENST00000568784 FGD2Q7Z6J4 655 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 OAFQ86UD1 273 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 NR2C2APQ86WQ0 139 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 FBXL6Q8N531 539 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 OR11H7Q8NGC8 314 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 OR52E2Q8NGJ4 325 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 ACOT12Q8WYK0 555 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 ELP4Q96EB1 424 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 SLC35A4Q96G79 324 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 ERMAPQ96PL5 475 aaPredicted RBP13.49□□□□□ -0.25
VPS35-210ENST00000568784 PDCD1LG2Q9BQ51 273 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 MCOLN1Q9GZU1 580 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 LRRN3Q9H3W5 708 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 CENPVL1A0A0U1RR11 272 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 LEUTXA8MZ59 168 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 AHCYP23526 432 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 ZBTB37Q5TC79 503 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 PYHIN1Q6K0P9 492 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 GID4Q8IVV7 300 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 C9orf62Q8N4C0 152 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 COQ8AQ8NI60 647 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 RIT1Q92963 219 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 LRIG1Q96JA1 1093 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 LMLNQ96KR4 655 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 FN3KQ9H479 309 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 POLHQ9Y253 713 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 A0A1W2PP55 124 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 KDM4EB2RXH2 506 aaPredicted RBP13.48□□□□□ -0.25
VPS35-210ENST00000568784 OR14C36Q8NHC7 312 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 SMPDL3BQ92485 455 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 DIO2Q92813 273 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 HS6ST2Q96MM7 605 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 ACTRT3Q9BYD9 372 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 MBNL1Q9NR56 388 aaKnown RBP13.48□□□□□ -0.25
VPS35-210ENST00000568784 CDV3Q9UKY7 258 aaKnown RBP13.48□□□□□ -0.25
VPS35-210ENST00000568784 PEX12O00623 359 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 NARSO43776 548 aaKnown RBP13.48□□□□□ -0.25
VPS35-210ENST00000568784 LILRB5O75023 590 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 SOX30O94993 753 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 DUSP6Q16828 381 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 TIGD3Q6B0B8 471 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 HDDC3Q8N4P3 179 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 GALNT11Q8NCW6 608 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 OR11H4Q8NGC9 324 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 OR52E1Q8NGJ3 308 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 TMEM239Q8WW34 195 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 NDOR1Q9UHB4 597 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 ACAD8Q9UKU7 415 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 GPR34Q9UPC5 381 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 ZNF443Q9Y2A4 671 aaPredicted RBP13.48□□□□□ -0.25
VPS35-210ENST00000568784 MED31Q9Y3C7 131 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 TRBV2A0A0J9YWF9 115 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 ACOD1A6NK06 481 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 FMO6PO60774 539 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 TRIM3O75382 744 aaPredicted RBP13.48□□□□□ -0.25
VPS35-210ENST00000568784 CLEC3AO75596 197 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 RASGRP1O95267 797 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 HK1P19367 917 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 FPR3P25089 353 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 HNRNPA1L2Q32P51 320 aaKnown RBP13.48□□□□□ -0.25
VPS35-210ENST00000568784 KIAA1211LQ6NV74 962 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 VITQ6UXI7 678 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 OR5J2Q8NH18 312 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 OR52N1Q8NH53 320 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 ELMOD3Q96FG2 381 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 PTCHD1Q96NR3 888 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 OR14A2Q96R54 314 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 DDOQ99489 341 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 MGAT4CQ9UBM8 478 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 UBQLN2Q9UHD9 624 aa13.48□□□□□ -0.25
VPS35-210ENST00000568784 EDDM13A0A1B0GTR0 161 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 C17orf113A0A1B0GUU1 675 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 DUXAA6NLW8 204 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 ARPC1BO15143 372 aaKnown RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 ZNF3P17036 446 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 P2RY2P41231 377 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 VEGFCP49767 419 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 SEC13P55735 322 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 EXOSC7Q15024 291 aaKnown RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 ABHD17CQ6PCB6 329 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 HCAR2Q8TDS4 363 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 MS4A6EQ96DS6 147 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 SEC22CQ9BRL7 303 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 TMEM27Q9HBJ8 222 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 PHPT1Q9NRX4 125 aaPredicted RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 RPS6KB2Q9UBS0 482 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 LIPT1Q9Y234 373 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 HELZP42694 1942 aaKnown RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 GRXCR1A8MXD5 290 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 ZNF888P0CJ79 500 aaPredicted RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 CMPK1P30085 196 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 SLC6A1P30531 599 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 PER3P56645 1201 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 EXOSC2Q13868 293 aaKnown RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 MRPL2Q5T653 305 aaKnown RBP13.47□□□□□ -0.25
VPS35-210ENST00000568784 TEX261Q6UWH6 196 aa13.47□□□□□ -0.25
VPS35-210ENST00000568784 MBOAT2Q6ZWT7 520 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms