RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FAM171A2A8MVW0 826 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 NPIPB9F8W1W9 429 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 H3BNH8 94 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 ZNF195O14628 629 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 OIP5O43482 229 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 SKAP2O75563 359 aaPredicted RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 KRT16P08779 473 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 PABPC4LP0CB38 370 aaKnown RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 CREB1P16220 341 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 PSMB1P20618 241 aaKnown RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 RNF144AP50876 292 aaPredicted RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 ATP12AP54707 1039 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 IFFO1Q0D2I5 559 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 TOMM34Q15785 309 aaPredicted RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 ZNF239Q16600 458 aaKnown RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 SPDYE7PQ495Y7 208 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 PLEKHM3Q6ZWE6 761 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 YTHDF3Q7Z739 585 aaKnown RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 CIARTQ8N365 385 aaPredicted RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 SFXN5Q8TD22 340 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 GPR119Q8TDV5 335 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 ABHD3Q8WU67 409 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 MOAP1Q96BY2 351 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 PERPQ96FX8 193 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 REXO5Q96IC2 774 aaKnown RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 Q96MF0 132 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 SRXN1Q9BYN0 137 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 BHLHE41Q9C0J9 482 aaPredicted RBP14.34□□□□□ -0.11
CLN3-229ENST00000567963 ACTR6Q9GZN1 396 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 DTNAQ9Y4J8 743 aa14.34□□□□□ -0.11
CLN3-229ENST00000567963 GJE1A6NN92 205 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 GTPBP1O00178 669 aaKnown RBP14.33□□□□□ -0.12
CLN3-229ENST00000567963 CFLARO15519 480 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 HEXAP06865 529 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 BPGMP07738 259 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 NR1H2P55055 460 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 SUMO3P55854 103 aaPredicted RBP14.33□□□□□ -0.12
CLN3-229ENST00000567963 VSNL1P62760 191 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 HBA1P69905 142 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 RNPS1Q15287 305 aaKnown RBP14.33□□□□□ -0.12
CLN3-229ENST00000567963 TMEM176BQ3YBM2 270 aaPredicted RBP14.33□□□□□ -0.12
CLN3-229ENST00000567963 TUSC5Q8IXB3 177 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 OR5AK3PQ8NH89 298 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 IGFBPL1Q8WX77 278 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 ZNF524Q96C55 264 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 TUBGCP3Q96CW5 907 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 PLPPR2Q96GM1 343 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 COX4I2Q96KJ9 171 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 OR7D2Q96RA2 312 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 BDH2Q9BUT1 245 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 DUSP26Q9BV47 211 aa14.33□□□□□ -0.12
CLN3-229ENST00000567963 TYROBPO43914 113 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 PLAUP00749 431 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 G6PDP11413 515 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 PRKCAP17252 672 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 ETV4P43268 484 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 C21orf58P58505 322 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 NDUFAF6Q330K2 333 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 TMEM201Q5SNT2 666 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 BHLHB9Q6PI77 547 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 ZNF704Q6ZNC4 412 aaPredicted RBP14.32□□□□□ -0.12
CLN3-229ENST00000567963 OR5D16Q8NGK9 328 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 ARSGQ96EG1 525 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 MRGPRX4Q96LA9 322 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 SDF2Q99470 211 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 HDHD5Q9BXW7 423 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 GSX2Q9BZM3 304 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 KLHL13Q9P2N7 655 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 ROS1P08922 2347 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 PRR14LQ5THK1 2151 aa14.32□□□□□ -0.12
CLN3-229ENST00000567963 H7C1Q1 480 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 GCM2O75603 506 aaPredicted RBP14.31□□□□□ -0.12
CLN3-229ENST00000567963 PRKD3O94806 890 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 NTN1O95631 604 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 LY6G6DO95868 133 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 CLDN8P56748 225 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 EMX2Q04743 252 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 MAD2L1Q13257 205 aaPredicted RBP14.31□□□□□ -0.12
CLN3-229ENST00000567963 SLC25A53Q5H9E4 307 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 TFAP2EQ6VUC0 442 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 FCRLAQ7L513 359 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 NUFIP2Q7Z417 695 aaKnown RBP14.31□□□□□ -0.12
CLN3-229ENST00000567963 WFDC8Q8IUA0 241 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 GABRG1Q8N1C3 465 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 ZNF614Q8N883 585 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 ATP6V1C2Q8NEY4 427 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 OR5W2Q8NH69 310 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 ZFP90Q8TF47 636 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 TMEM204Q9BSN7 226 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 COQ10BQ9H8M1 238 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 GP6Q9HCN6 339 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 NSD1Q96L73 2696 aaPredicted RBP14.31□□□□□ -0.12
CLN3-229ENST00000567963 FREM1Q5H8C1 2179 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 DUXAA6NLW8 204 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 ZNF264O43296 627 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 EIF4E2O60573 245 aaKnown RBP14.31□□□□□ -0.12
CLN3-229ENST00000567963 YES1P07947 543 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 PAX1P15863 534 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 MATN1P21941 496 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 PTH2RP49190 550 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms