RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 VDAC3Q9Y277 283 aa11.05□□□□□ -0.64
SF3B3-208ENST00000567250 GPC6Q9Y625 555 aaPredicted RBP11.05□□□□□ -0.64
SF3B3-208ENST00000567250 DNAJC13O75165 2243 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 A0A1B0GUH1 482 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 CDHR4A6H8M9 788 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 C17orf51A8MQB3 221 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 WISP1O95388 367 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 STSP08842 583 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ELK4P28324 431 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ADH6P28332 368 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 PRKAR1BP31321 381 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 UQCRFS1P47985 274 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 CPA2P48052 419 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 RNF144AP50876 292 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-208ENST00000567250 VEZF1Q14119 521 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ADRM1Q16186 407 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 PLPPR5Q32ZL2 321 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 C8orf82Q6P1X6 216 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-208ENST00000567250 CBLN3Q6UW01 205 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ZNF836Q6ZNA1 936 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 Q6ZPB1 254 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-208ENST00000567250 TRPM8Q7Z2W7 1104 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ZNF550Q7Z398 422 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 HMGN2P46Q86SG4 172 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 CD163Q86VB7 1156 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 PTOV1Q86YD1 416 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ARMC8Q8IUR7 673 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 GRAMD2AQ8IUY3 354 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 PGAM4Q8N0Y7 254 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ZNF563Q8TA94 476 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 PRR7Q8TB68 274 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 SLC26A7Q8TE54 656 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 TMEM234Q8WY98 164 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ST8SIA1Q92185 356 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ABTB1Q969K4 478 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-208ENST00000567250 SLC35B4Q969S0 331 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ARSGQ96EG1 525 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 TP63Q9H3D4 680 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ALG2Q9H553 416 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 MED17Q9NVC6 651 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 KLHL28Q9NXS3 571 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ABCD2Q9UBJ2 740 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 PRDM4Q9UKN5 801 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 OSGIN2Q9Y236 505 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 RPH3AQ9Y2J0 694 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-208ENST00000567250 ZNF835Q9Y2P0 537 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 HRH3Q9Y5N1 445 aa11.04□□□□□ -0.64
SF3B3-208ENST00000567250 GTF3C1Q12789 2109 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 ESPL1Q14674 2120 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 HEATR5AQ86XA9 2040 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 TRGV8A0A0C4DH27 118 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 ELOVL7A1L3X0 281 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 B4DXG7 233 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 NPIPA2E9PIF3 369 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 NPIPA3F8WFD2 350 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 WDR1O75083 606 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 GABRA1P14867 456 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 ME2P23368 584 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 AQP1P29972 269 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 PTGER4P35408 488 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 CA7P43166 264 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 GFRA1P56159 465 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 PER3P56645 1201 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 PCBP3P57721 371 aaKnown RBP11.03□□□□□ -0.64
SF3B3-208ENST00000567250 EEFSECP57772 596 aaKnown RBP11.03□□□□□ -0.64
SF3B3-208ENST00000567250 PSME3P61289 254 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 NCALDP61601 193 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 EEF1A1P68104 462 aaKnown RBP11.03□□□□□ -0.64
SF3B3-208ENST00000567250 CRYZQ08257 329 aaKnown RBP11.03□□□□□ -0.64
SF3B3-208ENST00000567250 NDUFAF6Q330K2 333 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 VASNQ6EMK4 673 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 MTFR2Q6P444 385 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 DHRS4L2Q6PKH6 230 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 ARSKQ6UWY0 536 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 CALHM3Q86XJ0 350 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 VRK2Q86Y07 508 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 SLC15A3Q8IY34 581 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 GTPBP8Q8N3Z3 284 aaPredicted RBP11.03□□□□□ -0.64
SF3B3-208ENST00000567250 ZG16BQ96DA0 208 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 NSL1Q96IY1 281 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 MRGPRX4Q96LA9 322 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 UGT2B28Q9BY64 529 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 PRDM14Q9GZV8 571 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 ARL8BQ9NVJ2 186 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 DNAJB12Q9NXW2 375 aaKnown RBP11.03□□□□□ -0.64
SF3B3-208ENST00000567250 SPRR3Q9UBC9 169 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 SLC6A5Q9Y345 797 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 NBASA2RRP1 2371 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 ARHGAP21Q5T5U3 1957 aa11.03□□□□□ -0.64
SF3B3-208ENST00000567250 PCNX3Q9H6A9 2034 aa11.02□□□□□ -0.64
SF3B3-208ENST00000567250 GCN1Q92616 2671 aaKnown RBP11.02□□□□□ -0.64
SF3B3-208ENST00000567250 OR2M5A3KFT3 312 aa11.02□□□□□ -0.65
SF3B3-208ENST00000567250 CFAP73A6NFT4 308 aa11.02□□□□□ -0.65
SF3B3-208ENST00000567250 CCT8L1PA6NM43 557 aa11.02□□□□□ -0.65
SF3B3-208ENST00000567250 CLDN24A6NM45 220 aa11.02□□□□□ -0.65
SF3B3-208ENST00000567250 GJE1A6NN92 205 aa11.02□□□□□ -0.65
SF3B3-208ENST00000567250 FAAHO00519 579 aa11.02□□□□□ -0.65
SF3B3-208ENST00000567250 IFNA14P01570 189 aa11.02□□□□□ -0.65
SF3B3-208ENST00000567250 HOXD4P09016 255 aaPredicted RBP11.02□□□□□ -0.65
SF3B3-208ENST00000567250 LINGO3P0C6S8 592 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms