RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF844Q08AG5 666 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 RNPS1Q15287 305 aaKnown RBP15.25■□□□□ 0.03
CLN3-216ENST00000565316 C6orf136Q5SQH8 315 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 DCST2Q5T1A1 773 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 TFAP2EQ6VUC0 442 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 WFDC8Q8IUA0 241 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 RIMKLAQ8IXN7 391 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 GABRG1Q8N1C3 465 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 RIBC1Q8N443 379 aaPredicted RBP15.25■□□□□ 0.03
CLN3-216ENST00000565316 ZNF611Q8N823 705 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 STEAP2Q8NFT2 490 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 FBXO27Q8NI29 283 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 SFXN5Q8TD22 340 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 ABHD3Q8WU67 409 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 CPNE4Q96A23 557 aaPredicted RBP15.25■□□□□ 0.03
CLN3-216ENST00000565316 C3orf30Q96M34 536 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 MECRQ9BV79 373 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 HDHD5Q9BXW7 423 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 ATAD3AQ9NVI7 634 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 KLHL13Q9P2N7 655 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 SLC17A7Q9P2U7 560 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 FAF1Q9UNN5 650 aaPredicted RBP15.25■□□□□ 0.03
CLN3-216ENST00000565316 CARD8Q9Y2G2 431 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 GPC6Q9Y625 555 aaPredicted RBP15.25■□□□□ 0.03
CLN3-216ENST00000565316 KCNE3Q9Y6H6 103 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 USF3Q68DE3 2245 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 HEATR5AQ86XA9 2040 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 TLDC2A0PJX2 215 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 GJE1A6NN92 205 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 H3BNH8 94 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 ETV2O00321 342 aaPredicted RBP15.24■□□□□ 0.03
CLN3-216ENST00000565316 ATP12AP54707 1039 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 TP53BP2Q13625 1128 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 TOMM34Q15785 309 aaPredicted RBP15.24■□□□□ 0.03
CLN3-216ENST00000565316 LSM12Q3MHD2 195 aaKnown RBP15.24■□□□□ 0.03
CLN3-216ENST00000565316 ATP6AP1LQ52LC2 224 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 SLC25A53Q5H9E4 307 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 ADAM5Q6NVV9 412 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 NUFIP2Q7Z417 695 aaKnown RBP15.24■□□□□ 0.03
CLN3-216ENST00000565316 OR2W6PQ8NHA6 318 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 ADAMTS15Q8TE58 950 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 NUDT8Q8WV74 236 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 TMEM171Q8WVE6 324 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 MOAP1Q96BY2 351 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 ZNF524Q96C55 264 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 CHMP6Q96FZ7 201 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 REXO5Q96IC2 774 aaKnown RBP15.24■□□□□ 0.03
CLN3-216ENST00000565316 C12orf49Q9H741 205 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 COQ10BQ9H8M1 238 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 LGALS13Q9UHV8 139 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 DTNAQ9Y4J8 743 aa15.24■□□□□ 0.03
CLN3-216ENST00000565316 NPIPA5A0A0B4J1W7 369 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 NPIPA7E9PJI5 369 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 SMAD7O15105 426 aaKnown RBP15.23■□□□□ 0.03
CLN3-216ENST00000565316 SLU7O95391 586 aaKnown RBP15.23■□□□□ 0.03
CLN3-216ENST00000565316 CNOT4O95628 575 aaKnown RBP15.23■□□□□ 0.03
CLN3-216ENST00000565316 C6orf47O95873 294 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 NUDT17P0C025 328 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 NPIPA8P0DM63 369 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 PRKCAP17252 672 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 PRPS1L1P21108 318 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 C21orf58P58505 322 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 TMEM176BQ3YBM2 270 aaPredicted RBP15.23■□□□□ 0.03
CLN3-216ENST00000565316 TMEM201Q5SNT2 666 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 IL23RQ5VWK5 629 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 ZCCHC23Q6ZST2 131 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 FCRLAQ7L513 359 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 TUSC5Q8IXB3 177 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 KRTCAP2Q8N6L1 136 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 S100PBPQ96BU1 408 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 MRGPRX4Q96LA9 322 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 PRPF18Q99633 342 aaKnown RBP15.23■□□□□ 0.03
CLN3-216ENST00000565316 C1orf50Q9BV19 199 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 BHLHE41Q9C0J9 482 aaPredicted RBP15.23■□□□□ 0.03
CLN3-216ENST00000565316 CXorf56Q9H5V9 222 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 L2HGDHQ9H9P8 463 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 ZDHHC2Q9UIJ5 367 aa15.23■□□□□ 0.03
CLN3-216ENST00000565316 ESPNB1AK53 854 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 EIF4E2O60573 245 aaKnown RBP15.22■□□□□ 0.03
CLN3-216ENST00000565316 DNAJA2O60884 412 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 PRKD3O94806 890 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 YES1P07947 543 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 RNF144AP50876 292 aaPredicted RBP15.22■□□□□ 0.03
CLN3-216ENST00000565316 CAPRIN1Q14444 709 aaKnown RBP15.22■□□□□ 0.03
CLN3-216ENST00000565316 P2RY6Q15077 328 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 SPDYE7PQ495Y7 208 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 SFRP5Q5T4F7 317 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 SLC43A2Q8N370 569 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 OR5W2Q8NH69 310 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 LILRB1Q8NHL6 650 aaPredicted RBP15.22■□□□□ 0.03
CLN3-216ENST00000565316 AGR3Q8TD06 166 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 TCP10LQ8TDR4 215 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 ZFP90Q8TF47 636 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 TACO1Q9BSH4 297 aaKnown RBP15.22■□□□□ 0.03
CLN3-216ENST00000565316 NMUR2Q9GZQ4 415 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 ANKZF1Q9H8Y5 726 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 ING1Q9UK53 422 aaPredicted RBP15.22■□□□□ 0.03
CLN3-216ENST00000565316 ATRQ13535 2644 aa15.22■□□□□ 0.03
CLN3-216ENST00000565316 GTPBP1O00178 669 aaKnown RBP15.21■□□□□ 0.03
CLN3-216ENST00000565316 SPAG7O75391 227 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms