RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ZNF563Q8TA94 476 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ZCCHC14Q8WYQ9 949 aaKnown RBP11.72□□□□□ -0.53
CLK3-214ENST00000564096 SH3YL1Q96HL8 342 aaPredicted RBP11.72□□□□□ -0.53
CLK3-214ENST00000564096 ZNF597Q96LX8 424 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 C5orf34Q96MH7 638 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 C9orf16Q9BUW7 83 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 SEMA6AQ9H2E6 1030 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 PTGES2Q9H7Z7 377 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 GALNT9Q9HCQ5 603 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 SH2D2AQ9NP31 389 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ANKRD10Q9NXR5 420 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 CNOT11Q9UKZ1 510 aaKnown RBP11.72□□□□□ -0.53
CLK3-214ENST00000564096 TMCC3Q9ULS5 477 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 IGLV3-32A0A0A0MS00 114 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 A0A1W2PRQ8 180 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 ANKUB1A6NFN9 424 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 K7ENP7 123 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 TNFRSF11BO00300 401 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 CASQ2O14958 399 aaPredicted RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 DIRAS1O95057 198 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 PRSS23O95084 383 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 WDPCPO95876 746 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 CCL3P10147 92 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 CD46P15529 392 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 RYKP34925 604 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 YAP1P46937 504 aaKnown RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 ZNF41P51814 821 aaPredicted RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 PLAURQ03405 335 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 DGCR6Q14129 220 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 TRAM2Q15035 370 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 COL28A1Q2UY09 1125 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 NDUFAF6Q330K2 333 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 WBP2NLQ6ICG8 309 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 HMBOX1Q6NT76 420 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 BORAQ6PGQ7 559 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 SHQ1Q6PI26 577 aaKnown RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 INO80CQ6PI98 192 aaPredicted RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 AMIGO2Q86SJ2 522 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 RBM45Q8IUH3 476 aaKnown RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 CADM2Q8N3J6 435 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 LINC00471Q8N535 108 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 LSMEM1Q8N8F7 131 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 FDCSPQ8NFU4 85 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 OR5K1Q8NHB7 308 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 ADAMTS16Q8TE57 1224 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 DNAJA4Q8WW22 397 aaPredicted RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 TMEM234Q8WY98 164 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 NRBF2Q96F24 287 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 SLC41A3Q96GZ6 507 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 TMEM41AQ96HV5 264 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 OSBPL10Q9BXB5 764 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 ANGPTL4Q9BY76 406 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 KIF17Q9P2E2 1029 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 B4GALT7Q9UBV7 327 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 NKX1-2Q9UD57 310 aaPredicted RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 BOKQ9UMX3 212 aaPredicted RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 RAXQ9Y2V3 346 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 KLF13Q9Y2Y9 288 aaPredicted RBP11.71□□□□□ -0.53
CLK3-214ENST00000564096 LYVE1Q9Y5Y7 322 aa11.71□□□□□ -0.53
CLK3-214ENST00000564096 WDFY3Q8IZQ1 3526 aa11.71□□□□□ -0.54
CLK3-214ENST00000564096 A0A0B4J2E0 115 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 A0A1B0GX12 115 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 SAC3D1A6NKF1 404 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 J3KTA2 159 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 SNPHO15079 494 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 CHP2O43745 196 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 BCAS1O75363 584 aaPredicted RBP11.7□□□□□ -0.54
CLK3-214ENST00000564096 CEACAM4O75871 244 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 PRG2P13727 222 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 HTR2AP28223 471 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 PEX2P28328 305 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 IFNGR2P38484 337 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 CD96P40200 585 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 GAS1P54826 345 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 HOXC5Q00444 222 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 PIN1Q13526 163 aaPredicted RBP11.7□□□□□ -0.54
CLK3-214ENST00000564096 OR1Q1Q15612 314 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 IQCCQ4KMZ1 466 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 ALG10BQ5I7T1 473 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 DCST1Q5T197 706 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 ZNF468Q5VIY5 522 aaPredicted RBP11.7□□□□□ -0.54
CLK3-214ENST00000564096 BICRALQ6AI39 1079 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 ULK3Q6PHR2 472 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 TMEM178AQ8NBL3 297 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 RNF217Q8TC41 542 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 DUSP19Q8WTR2 217 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 SLC38A4Q969I6 547 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 ARSGQ96EG1 525 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 MPP4Q96JB8 637 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 DHRS1Q96LJ7 313 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 RSPO3Q9BXY4 272 aaPredicted RBP11.7□□□□□ -0.54
CLK3-214ENST00000564096 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.7□□□□□ -0.54
CLK3-214ENST00000564096 ZNF552Q9H707 407 aaPredicted RBP11.7□□□□□ -0.54
CLK3-214ENST00000564096 NMNAT1Q9HAN9 279 aaPredicted RBP11.7□□□□□ -0.54
CLK3-214ENST00000564096 CTPS2Q9NRF8 586 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 ICAM5Q9UMF0 924 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 OAZ3Q9UMX2 235 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 A4GNTQ9UNA3 340 aa11.7□□□□□ -0.54
CLK3-214ENST00000564096 PCDHGA9Q9Y5G4 932 aaKnown RBP11.7□□□□□ -0.54
CLK3-214ENST00000564096 U3KQV3 271 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms